RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NEK3P51956 506 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 MANFP55145 182 aaKnown RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 MOGSQ13724 837 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 SAFBQ15424 915 aaKnown RBP eCLIP4.14□□□□□ -1.75
CD44-229ENST00000528672 C4orf46Q504U0 113 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 C10orf62Q5T681 223 aaPredicted RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 IFIT1BQ5T764 474 aaKnown RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 DTX3Q8N9I9 347 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 MARCH10Q8NA82 808 aaPredicted RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 NUDT10Q8NFP7 164 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 RAB24Q969Q5 203 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 NUDT11Q96G61 164 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 SPATA25Q9BR10 227 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 C11orf84Q9BUA3 381 aaPredicted RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 NMRK2Q9NPI5 230 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 DMRT3Q9NQL9 472 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 ACSS2Q9NR19 701 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 CCM2LQ9NUG4 571 aaPredicted RBP4.14□□□□□ -1.75
CD44-229ENST00000528672 NTMQ9P121 344 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 ARHGAP28Q9P2N2 729 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 KCNG1Q9UIX4 513 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 USP18Q9UMW8 372 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 FAM50BQ9Y247 325 aa4.14□□□□□ -1.75
CD44-229ENST00000528672 A0A0A6YYK5 440 aaPredicted RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 UBA6A0AVT1 1052 aaPredicted RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 FFAR3O14843 346 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 AP1G1O43747 822 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 CTNND1O60716 968 aaKnown RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 SASH1O94885 1247 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 ZRANB2O95218 330 aaKnown RBP eCLIP4.13□□□□□ -1.75
CD44-229ENST00000528672 CHGBP05060 677 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 CYP17A1P05093 508 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 AKAP5P24588 427 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 CD40P25942 277 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 STAT5BP51692 787 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 LGALS4P56470 323 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 NKX3-2P78367 333 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 CDK17Q00537 523 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 HSP90AB4PQ58FF6 505 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 RRP12Q5JTH9 1297 aaKnown RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 TMED8Q6PL24 325 aaPredicted RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 GAREM2Q75VX8 874 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 GPR155Q7Z3F1 870 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 APBB1IPQ7Z5R6 666 aaPredicted RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 COL23A1Q86Y22 540 aaPredicted RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 ZZZ3Q8IYH5 903 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 KYQ8NBH2 561 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 SLC35G2Q8TBE7 412 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 C20orf173Q96LM9 149 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 TEKT5Q96M29 485 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 NAP1L5Q96NT1 182 aaPredicted RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 ACAP3Q96P50 834 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 TMEM209Q96SK2 561 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 SOX7Q9BT81 388 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 PARD6AQ9NPB6 346 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 INCENPQ9NQS7 918 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 C1orf112Q9NSG2 853 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 DNAJC28Q9NX36 388 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 DDX20Q9UHI6 824 aaKnown RBP4.13□□□□□ -1.75
CD44-229ENST00000528672 TUBD1Q9UJT1 453 aa4.13□□□□□ -1.75
CD44-229ENST00000528672 DDX3XO00571 662 aaKnown RBP eCLIP4.12□□□□□ -1.75
CD44-229ENST00000528672 APAF1O14727 1248 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 TRIM13O60858 407 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 OFD1O75665 1012 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 FOSP01100 380 aaPredicted RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 HNRNPLP14866 589 aaKnown RBP eCLIP4.12□□□□□ -1.75
CD44-229ENST00000528672 HOXA5P20719 270 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 C5AR1P21730 350 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 RPL13P26373 211 aaKnown RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 ALDH6A1Q02252 535 aaKnown RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 FAM26FQ5R3K3 315 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 KANK2Q63ZY3 851 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 VASNQ6EMK4 673 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 SLFN12LQ6IEE8 588 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 LARP4Q71RC2 724 aaKnown RBP eCLIP4.12□□□□□ -1.75
CD44-229ENST00000528672 FRMD5Q7Z6J6 570 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 C11orf96Q7Z7L8 435 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 SLC41A1Q8IVJ1 513 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 SPICE1Q8N0Z3 855 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 MIER2Q8N344 545 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 TP53I13Q8NBR0 393 aaPredicted RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 SYT8Q8NBV8 401 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 FBXO18Q8NFZ0 1043 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 TSPEARQ8WU66 669 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 JADE3Q92613 823 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 E2F7Q96AV8 911 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 RUNDC1Q96C34 613 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 STRBPQ96SI9 672 aaKnown RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 FDXACB1Q9BRP7 624 aaPredicted RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 UBA5Q9GZZ9 404 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 KIAA1683Q9H0B3 1180 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 CSRNP2Q9H175 543 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 SLC12A5Q9H2X9 1139 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 KCND1Q9NSA2 647 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.12□□□□□ -1.75
CD44-229ENST00000528672 RTEL1Q9NZ71 1219 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 ARHGAP20Q9P2F6 1191 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 DPP7Q9UHL4 492 aa4.12□□□□□ -1.75
CD44-229ENST00000528672 EVLQ9UI08 416 aaPredicted RBP4.12□□□□□ -1.75
CD44-229ENST00000528672 TAGLN3Q9UI15 199 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms