RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ASAP2O43150 1006 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 KPNA6O60684 536 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 AKAP3O75969 853 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 C6orf222P0C671 652 aaPredicted RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 RARBP10826 455 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 IRX5P78411 483 aaPredicted RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 TFDP1Q14186 410 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 MFSD10Q14728 455 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 KIAA0753Q2KHM9 967 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 PXYLP1Q8TE99 480 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 TMEM174Q8WUU8 243 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 MKNK1Q9BUB5 465 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 NDST4Q9H3R1 872 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 TMEM134Q9H6X4 195 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 ARMCX3Q9UH62 379 aaPredicted RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 K7ERI5 159 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 TMOD1P28289 359 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 PSMC2P35998 433 aaKnown RBP23.03■■□□□ 1.28
VPS28-208ENST00000527797 PSEN2P49810 448 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 CYP2J2P51589 502 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 CLCN3P51790 818 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 CHMP4BP1P59074 171 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 FKBP15Q5T1M5 1219 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 TRIM59Q8IWR1 403 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 BEGAINQ9BUH8 593 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 KATNAL1Q9BW62 490 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 UPF3AQ9H1J1 476 aaKnown RBP23.03■■□□□ 1.28
VPS28-208ENST00000527797 FRMD4BQ9Y2L6 1034 aa23.03■■□□□ 1.28
VPS28-208ENST00000527797 EXOC3O60645 756 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 EFNA5P52803 228 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 PRMT2P55345 433 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 MAP2K1Q02750 393 aaPredicted RBP23.02■■□□□ 1.28
VPS28-208ENST00000527797 ARMCX5Q6P1M9 558 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 TAS1R3Q7RTX0 852 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 RHPN2Q8IUC4 686 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 ZBTB10Q96DT7 871 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 BICD1Q96G01 975 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.02■■□□□ 1.28
VPS28-208ENST00000527797 CASP8AP2Q9UKL3 1982 aa23.02■■□□□ 1.28
VPS28-208ENST00000527797 A0A1W2PQC6 194 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 HAS3O00219 553 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 ZEB2O60315 1214 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 SRGAP2CP0DJJ0 459 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 SMIM10L2AP0DMW4 78 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 SMIM10L2BP0DMW5 78 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 CCND3P30281 292 aaPredicted RBP23.01■■□□□ 1.27
VPS28-208ENST00000527797 CASP4P49662 377 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 PPP2R3AQ06190 1150 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 GNASQ5JWF2 1037 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 ZBTB8OSQ8IWT0 167 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 FAM186BQ8IYM0 893 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 LINC01465Q8N7H1 131 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 RNF149Q8NC42 400 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 C2orf40Q9H1Z8 148 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 ITIH6Q6UXX5 1313 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 NRCAMQ92823 1304 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 PHLPP2Q6ZVD8 1323 aa23.01■■□□□ 1.27
VPS28-208ENST00000527797 TISP43B9A030 160 aa23■■□□□ 1.27
VPS28-208ENST00000527797 ANKRD63C9JTQ0 380 aa23■■□□□ 1.27
VPS28-208ENST00000527797 NKX3-2P78367 333 aa23■■□□□ 1.27
VPS28-208ENST00000527797 PURAQ00577 322 aaKnown RBP23■■□□□ 1.27
VPS28-208ENST00000527797 TBX2Q13207 712 aaPredicted RBP23■■□□□ 1.27
VPS28-208ENST00000527797 MARCH8Q5T0T0 291 aa23■■□□□ 1.27
VPS28-208ENST00000527797 CBWD1Q9BRT8 395 aa23■■□□□ 1.27
VPS28-208ENST00000527797 PCIF1Q9H4Z3 704 aa23■■□□□ 1.27
VPS28-208ENST00000527797 SETD4Q9NVD3 440 aa23■■□□□ 1.27
VPS28-208ENST00000527797 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23■■□□□ 1.278e-7■■□□□ 13.6
VPS28-208ENST00000527797 MYADML2A6NDP7 307 aa23■■□□□ 1.27
VPS28-208ENST00000527797 HNRNPDLO14979 420 aaKnown RBP23■■□□□ 1.27
VPS28-208ENST00000527797 PGK1P00558 417 aa23■■□□□ 1.27
VPS28-208ENST00000527797 MAP3K21Q5TCX8 1036 aa23■■□□□ 1.27
VPS28-208ENST00000527797 CDCA2Q69YH5 1023 aaPredicted RBP23■■□□□ 1.27
VPS28-208ENST00000527797 XXYLT1Q8NBI6 393 aa23■■□□□ 1.27
VPS28-208ENST00000527797 HSPBP1Q9NZL4 362 aa23■■□□□ 1.27
VPS28-208ENST00000527797 LIG4P49917 911 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 PPFIBP1Q86W92 1011 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 CCDC150Q8NCX0 1101 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 LMBR1Q8WVP7 490 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 NLRP4Q96MN2 994 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 ZNF830Q96NB3 372 aaPredicted RBP22.99■■□□□ 1.27
VPS28-208ENST00000527797 MAP7D2Q96T17 732 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 XPNPEP3Q9NQH7 507 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 AKT3Q9Y243 479 aa22.99■■□□□ 1.27
VPS28-208ENST00000527797 PIGRP01833 764 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 GJB1P08034 283 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 HSPA6P17066 643 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 POU5F1BQ06416 359 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 NFRKBQ6P4R8 1299 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 SLAIN1Q8ND83 568 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 BORCS6Q96GS4 357 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 ERGIC2Q96RQ1 377 aa22.98■■□□□ 1.27
VPS28-208ENST00000527797 MTG1Q9BT17 334 aaPredicted RBP22.98■■□□□ 1.27
VPS28-208ENST00000527797 GARTP22102 1010 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 ADSSP30520 456 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 TRIM14Q14142 442 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 SLC39A4Q6P5W5 647 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 LRRC8AQ8IWT6 810 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 CACTINQ8WUQ7 758 aaKnown RBP22.97■■□□□ 1.27
VPS28-208ENST00000527797 POMGNT1Q8WZA1 660 aa22.97■■□□□ 1.27
VPS28-208ENST00000527797 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms