RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 PROB1E7EW31 1015 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 GALR2O43603 387 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 SLC37A4O43826 429 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 N4BP1O75113 896 aaKnown RBP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 ZNF623O75123 536 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 ZC3H11AO75152 810 aaKnown RBP eCLIP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 CDC45O75419 566 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 MAFO75444 373 aaPredicted RBP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 EFEMP2O95967 443 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 NPR3P17342 541 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 TMOD1P28289 359 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 KRT17Q04695 432 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 ITIH3Q06033 890 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 POTEGQ6S5H5 508 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 DDX53Q86TM3 631 aaKnown RBP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 SNX27Q96L92 541 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 LARP6Q9BRS8 491 aaKnown RBP16.07■□□□□ 0.16
CPSF1-201ENST00000526271 FAM105AQ9NUU6 356 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 VAV3Q9UKW4 847 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 CACNA1AO00555 2505 aa16.07■□□□□ 0.16
CPSF1-201ENST00000526271 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-201ENST00000526271 PI15O43692 258 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 ST18O60284 1047 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 HMGB1P09429 215 aaKnown RBP16.06■□□□□ 0.16
CPSF1-201ENST00000526271 HOXA11P31270 313 aaPredicted RBP16.06■□□□□ 0.16
CPSF1-201ENST00000526271 SFNP31947 248 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 JAK3P52333 1124 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 NPEPPSP55786 919 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 MCTP2Q6DN12 878 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 TMC5Q6UXY8 1006 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 MIER3Q7Z3K6 550 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 ZDHHC14Q8IZN3 488 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 PRRX2Q99811 253 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 TEKT3Q9BXF9 490 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 CHST12Q9NRB3 414 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 MARCH5Q9NX47 278 aa16.06■□□□□ 0.16
CPSF1-201ENST00000526271 FRYLO94915 3013 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 CCDC196A0A1B0GTZ2 297 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 F8W810 466 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 SRGAP2BP0DMP2 458 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 MTMR3Q13615 1198 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 TPRNQ4KMQ1 711 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 XKR3Q5GH77 459 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 NOMO2Q5JPE7 1267 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 BLOC1S2Q6QNY1 142 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 TAS1R1Q7RTX1 841 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 RHPN2Q8IUC4 686 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 RDM1Q8NG50 284 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 CCDC12Q8WUD4 166 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 ATOH1Q92858 354 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 TMEM169Q96HH4 297 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 NECTIN4Q96NY8 510 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 MRPL9Q9BYD2 267 aaKnown RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 GCOM2Q9BZD3 368 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 DACT1Q9NYF0 836 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 SUCLA2Q9P2R7 463 aaPredicted RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 PCDHA4Q9UN74 947 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 PIN4Q9Y237 131 aaKnown RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 INPP5FQ9Y2H2 1132 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 NR2E1Q9Y466 385 aa16.05■□□□□ 0.16
CPSF1-201ENST00000526271 MTCL1Q9Y4B5 1905 aaKnown RBP16.05■□□□□ 0.16
CPSF1-201ENST00000526271 TDRD15B5MCY1 1934 aaKnown RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 ZBTB39O15060 712 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 CNPP09543 421 aaKnown RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 MTHFRP42898 656 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 ALDH7A1P49419 539 aaKnown RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 CLCN4P51793 760 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 EARS2Q5JPH6 523 aaKnown RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 TWF2Q6IBS0 349 aaKnown RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 CENPQQ7L2Z9 268 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 MRPL10Q7Z7H8 261 aaKnown RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 UBALD2Q8IYN6 164 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 RNF168Q8IYW5 571 aaPredicted RBP16.04■□□□□ 0.16
CPSF1-201ENST00000526271 ZNF710Q8N1W2 664 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 SCLT1Q96NL6 688 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 KLHL5Q96PQ7 755 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 RNF39Q9H2S5 420 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 SH3GLB2Q9NR46 395 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 GJB4Q9NTQ9 266 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 AGPAT5Q9NUQ2 364 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 PCDHB2Q9Y5E7 798 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 COL4A3Q01955 1670 aa16.04■□□□□ 0.16
CPSF1-201ENST00000526271 PRR23AA6NEV1 266 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 NBL1P41271 181 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 POLGP54098 1239 aaPredicted RBP16.03■□□□□ 0.16
CPSF1-201ENST00000526271 CES5AQ6NT32 575 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 GPR149Q86SP6 731 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 ZBTB33Q86T24 672 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 ZNF410Q86VK4 478 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 DAGLBQ8NCG7 672 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 SMG8Q8ND04 991 aaKnown RBP16.03■□□□□ 0.16
CPSF1-201ENST00000526271 CCDC148Q8NFR7 591 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 BICD2Q8TD16 824 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 HAS1Q92839 578 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 NLRP4Q96MN2 994 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 GBP3Q9H0R5 595 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 DHX33Q9H6R0 707 aaKnown RBP16.03■□□□□ 0.16
CPSF1-201ENST00000526271 KCNMB3Q9NPA1 279 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 MIOSQ9NXC5 875 aa16.03■□□□□ 0.16
CPSF1-201ENST00000526271 USTQ9Y2C2 406 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms