RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ABI1Q8IZP0 508 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 LRRC43Q8N309 656 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 LRRC71Q8N4P6 559 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 DYDC2Q96IM9 177 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 ZNF396Q96N95 335 aaPredicted RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 EIF2AK1Q9BQI3 630 aaKnown RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 LXNQ9BS40 222 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 ELAC1Q9H777 363 aaKnown RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 ZSWIM4Q9H7M6 989 aa11.3□□□□□ -0.6
VPS28-204ENST00000526054 TYW1Q9NV66 732 aaKnown RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 SEPT9Q9UHD8 586 aaPredicted RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 USP15Q9Y4E8 981 aaPredicted RBP11.3□□□□□ -0.6
VPS28-204ENST00000526054 PER2O15055 1255 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 SRGAP2BP0DMP2 458 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 ZSCAN20P17040 1043 aaPredicted RBP11.29□□□□□ -0.6
VPS28-204ENST00000526054 NLRP11P59045 1033 aaKnown RBP11.29□□□□□ -0.6
VPS28-204ENST00000526054 CYP4A11Q02928 519 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 DSC3Q14574 896 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 DUSP6Q16828 381 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 FOXD4L5Q5VV16 416 aaPredicted RBP11.29□□□□□ -0.6
VPS28-204ENST00000526054 PDE12Q6L8Q7 609 aaKnown RBP11.29□□□□□ -0.6
VPS28-204ENST00000526054 HFE2Q6ZVN8 426 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 C4orf19Q8IY42 314 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 ZNF710Q8N1W2 664 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 LINC01465Q8N7H1 131 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 FOXD4L4Q8WXT5 416 aaPredicted RBP11.29□□□□□ -0.6
VPS28-204ENST00000526054 CDCA3Q99618 268 aaPredicted RBP11.29□□□□□ -0.6
VPS28-204ENST00000526054 TMEM117Q9H0C3 514 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 CWH43Q9H720 699 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 TUFT1Q9NNX1 390 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 ENTPD7Q9NQZ7 604 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 LRWD1Q9UFC0 647 aa11.29□□□□□ -0.6
VPS28-204ENST00000526054 ZNF318Q5VUA4 2279 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 VWA3AA6NCI4 1184 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 DDX11L8A8MPP1 907 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 FSCN2O14926 492 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 BRD1O95696 1058 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 EIF4BP23588 611 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 PPM1AP35813 382 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 GPC3P51654 580 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 ERVFC1P60507 584 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 FAM189BP81408 668 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 RBM10P98175 930 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 TBC1D8BQ0IIM8 1120 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 PKP1Q13835 747 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 CTTNQ14247 550 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 PDIA5Q14554 519 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 PLPP4Q5VZY2 271 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 FAM173BQ6P4H8 233 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 OTUD6AQ7L8S5 288 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 TPH2Q8IWU9 490 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 IGSF22Q8N9C0 903 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 RNF169Q8NCN4 708 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 VN1R2Q8NFZ6 395 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 NLRP7Q8WX94 980 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 MRPS27Q92552 414 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 ZNF668Q96K58 619 aaPredicted RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 CCDC43Q96MW1 224 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 ZNF558Q96NG5 402 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 IPO9Q96P70 1041 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 USP28Q96RU2 1077 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 HSD17B14Q9BPX1 270 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 TCF25Q9BQ70 676 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 POLR3CQ9BUI4 534 aaPredicted RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 NIFKQ9BYG3 293 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 ADAMTS10Q9H324 1103 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 RGL1Q9NZL6 768 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 PUF60Q9UHX1 559 aaKnown RBP11.28□□□□□ -0.6
VPS28-204ENST00000526054 LZTS1Q9Y250 596 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 PPME1Q9Y570 386 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 CLIC4Q9Y696 253 aa11.28□□□□□ -0.6
VPS28-204ENST00000526054 LOC730098B7Z3J9 87 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 SLITRK3O94933 977 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 LYPLA2O95372 231 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 DARSP14868 501 aaKnown RBP11.27□□□□□ -0.61
VPS28-204ENST00000526054 MUTP22033 750 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 RPA1P27694 616 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 YWHABP31946 246 aaKnown RBP11.27□□□□□ -0.61
VPS28-204ENST00000526054 CCT6AP40227 531 aaKnown RBP11.27□□□□□ -0.61
VPS28-204ENST00000526054 PBX3P40426 434 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 NUCB2P80303 420 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 PLCB3Q01970 1234 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 STK38Q15208 465 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 PTPAQ15257 358 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 MTERF2Q49AM1 385 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 KRT79Q5XKE5 535 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 ATL3Q6DD88 541 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 KCNT2Q6UVM3 1135 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 ECHDC2Q86YB7 292 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 SNX29Q8TEQ0 813 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 AK8Q96MA6 479 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 MFSD14AQ96MC6 490 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 CASD1Q96PB1 797 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 JPH2Q9BR39 696 aaPredicted RBP11.27□□□□□ -0.61
VPS28-204ENST00000526054 PHF7Q9BWX1 381 aaPredicted RBP11.27□□□□□ -0.61
VPS28-204ENST00000526054 KCNH6Q9H252 994 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 RNF19AQ9NV58 838 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 ATP6V1DQ9Y5K8 247 aa11.27□□□□□ -0.61
VPS28-204ENST00000526054 MORC2Q9Y6X9 1032 aaPredicted RBP11.27□□□□□ -0.61
VPS28-204ENST00000526054 TECTAO75443 2155 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms