RNA–Protein interactions for RNA: ENST00000523511.1

LSM1-205, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 700 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-205ENST00000523511 ARL6IP4Q66PJ3 421 aaKnown RBP18.07■□□□□ 0.48
LSM1-205ENST00000523511 NOTUMQ6P988 496 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 PADI6Q6TGC4 694 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 IFNLR1Q8IU57 520 aaPredicted RBP18.07■□□□□ 0.48
LSM1-205ENST00000523511 IFT74Q96LB3 600 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 CASD1Q96PB1 797 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 POLR3FQ9H1D9 316 aaPredicted RBP18.07■□□□□ 0.48
LSM1-205ENST00000523511 C2orf40Q9H1Z8 148 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 ALG13Q9NP73 1137 aaKnown RBP18.07■□□□□ 0.48
LSM1-205ENST00000523511 XPNPEP1Q9NQW7 623 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 KANSL3Q9P2N6 904 aa18.07■□□□□ 0.48
LSM1-205ENST00000523511 CHD9Q3L8U1 2897 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 CDH23Q9H251 3354 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 FSD2A1L4K1 749 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 RBAK-RBAKDNI3L0D1 243 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 GRM6O15303 877 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 LINC00271P0C7V0 271 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 CYP11B2P19099 503 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 GATMP50440 423 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 POTEGQ6S5H5 508 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 MAEAQ7L5Y9 396 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 ZNF598Q86UK7 904 aaKnown RBP18.06■□□□□ 0.48
LSM1-205ENST00000523511 SPPL3Q8TCT6 385 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 URGCPQ8TCY9 931 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 POF1BQ8WVV4 589 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 CDK5RAP3Q96JB5 506 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 ZNF558Q96NG5 402 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 TRIM6Q9C030 488 aaPredicted RBP18.06■□□□□ 0.48
LSM1-205ENST00000523511 NT5C3AQ9H0P0 336 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 FAM50BQ9Y247 325 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 PCDHB2Q9Y5E7 798 aa18.06■□□□□ 0.48
LSM1-205ENST00000523511 A0A087WWV3 80 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 VPS37CA5D8V6 355 aaPredicted RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 LRRIQ4A6NIV6 560 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 PDIA4P13667 645 aaKnown RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 ATP2C1P98194 919 aaPredicted RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 RNASELQ05823 741 aaKnown RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 COLGALT1Q8NBJ5 622 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 HELQQ8TDG4 1101 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 KIFAP3Q92845 792 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 PRIMPOLQ96LW4 560 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 AK8Q96MA6 479 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 COL25A1Q9BXS0 654 aaPredicted RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 DDX19AQ9NUU7 478 aaKnown RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 PRMT7Q9NVM4 692 aaPredicted RBP18.05■□□□□ 0.48
LSM1-205ENST00000523511 SPG21Q9NZD8 308 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 STK39Q9UEW8 545 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 LZTS1Q9Y250 596 aa18.05■□□□□ 0.48
LSM1-205ENST00000523511 CNTNAP2Q9UHC6 1331 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.04■□□□□ 0.48
LSM1-205ENST00000523511 SLC26A4O43511 780 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 FGF18O76093 207 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 ITGB1P05556 798 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 GLRA2P23416 452 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 PLCB3Q01970 1234 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 CAPSQ13938 189 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 TCEAL5Q5H9L2 206 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 NOMO2Q5JPE7 1267 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 KCNT2Q6UVM3 1135 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 EP400NLQ6ZTU2 488 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 DEPTORQ8TB45 409 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 PABPC5Q96DU9 382 aaKnown RBP18.04■□□□□ 0.48
LSM1-205ENST00000523511 FAM193BQ96PV7 902 aaPredicted RBP18.04■□□□□ 0.48
LSM1-205ENST00000523511 BHMT2Q9H2M3 363 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 CWH43Q9H720 699 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 UBE2ZQ9H832 354 aaPredicted RBP18.04■□□□□ 0.48
LSM1-205ENST00000523511 TTC3P53804 2025 aa18.04■□□□□ 0.48
LSM1-205ENST00000523511 PHLPP2Q6ZVD8 1323 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 K7ELQ4 463 aaPredicted RBP18.03■□□□□ 0.48
LSM1-205ENST00000523511 EYA4O95677 639 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 ITGA4P13612 1032 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 HOXA11P31270 313 aaPredicted RBP18.03■□□□□ 0.48
LSM1-205ENST00000523511 NAMPTP43490 491 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 EFNA5P52803 228 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 TMEM132AQ24JP5 1023 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 APBB1IPQ7Z5R6 666 aaPredicted RBP18.03■□□□□ 0.48
LSM1-205ENST00000523511 MRPL10Q7Z7H8 261 aaKnown RBP18.03■□□□□ 0.48
LSM1-205ENST00000523511 ASAP3Q8TDY4 903 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 TIPINQ9BVW5 301 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 CSRNP2Q9H175 543 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 MINDY3Q9H8M7 445 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 NGRNQ9NPE2 291 aaKnown RBP18.03■□□□□ 0.48
LSM1-205ENST00000523511 TLR9Q9NR96 1032 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 PTPRSQ13332 1948 aa18.03■□□□□ 0.48
LSM1-205ENST00000523511 SIP14410 1827 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 VWA3AA6NCI4 1184 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 TSPAN1O60635 241 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 NR1I2O75469 434 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 HSP90AA1P07900 732 aaKnown RBP18.02■□□□□ 0.48
LSM1-205ENST00000523511 NCLP19338 710 aaKnown RBP18.02■□□□□ 0.48
LSM1-205ENST00000523511 UBA7P41226 1012 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 TFF2Q03403 129 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 MBTD1Q05BQ5 628 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 ZRSR1Q15695 479 aaKnown RBP18.02■□□□□ 0.48
LSM1-205ENST00000523511 MAPK6Q16659 721 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 CLLU1OSQ5K130 101 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 TMEM87AQ8NBN3 555 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 MRPS27Q92552 414 aaKnown RBP18.02■□□□□ 0.48
LSM1-205ENST00000523511 CALML4Q96GE6 196 aa18.02■□□□□ 0.48
LSM1-205ENST00000523511 TMEM169Q96HH4 297 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms