RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 DDX25Q9UHL0 483 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 PPLO60437 1756 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 GOLGA8CPA6NN73 597 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 GOLGA8MH3BSY2 632 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 N4BP1O75113 896 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 MFAP3LO75121 409 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 DR1Q01658 176 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 EN1Q05925 392 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 RINT1Q6NUQ1 792 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 RAPH1Q70E73 1250 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 DDI1Q8WTU0 396 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 PARVGQ9HBI0 331 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 CD248Q9HCU0 757 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 KDRP35968 1356 aa9.28□□□□□ -0.92
LIMCH1-218ENST00000513024 ESYT3A0FGR9 886 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 TYW5A2RUC4 315 aaKnown RBP9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 UBTFL6P0CB48 400 aaPredicted RBP9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 PGM1P36871 562 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 LIG4P49917 911 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 ARPC4P59998 168 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 BTKQ06187 659 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 MFSD14BQ5SR56 506 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 PBKQ96KB5 322 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 SLC40A1Q9NP59 571 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 ARL2BPQ9Y2Y0 163 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 FIS1Q9Y3D6 152 aa9.27□□□□□ -0.92
LIMCH1-218ENST00000513024 LCA5LO95447 670 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 KPNA2P52292 529 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 MAGOHP61326 146 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 DYNLT1P63172 113 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 PTK2Q05397 1052 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 KRT31Q15323 416 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ADRM1Q16186 407 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 LRRC47Q8N1G4 583 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 STX19Q8N4C7 294 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 TRPC7Q9HCX4 862 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 IL1RAPL1Q9NZN1 696 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 AP4S1Q9Y587 144 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 XDHP47989 1333 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP10DQ9P241 1426 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ARHGEF40Q8TER5 1519 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ARFIP2P53365 341 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 TMPRSS15P98073 1019 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 XKR9Q5GH70 373 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 FAM160B1Q5W0V3 765 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 SARM1Q6SZW1 724 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ZFYVE28Q9HCC9 887 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ARPP21Q9UBL0 812 aaPredicted RBP9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP7BP35670 1465 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 CLIC2O15247 247 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ORC4O43929 436 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 MYL7Q01449 175 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 MKRN3Q13064 507 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 NR1H3Q13133 447 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 UBE2Q1Q7Z7E8 422 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 TNIP2Q8NFZ5 429 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 MMS19Q96T76 1030 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 COG4Q9H9E3 785 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 NOD2Q9HC29 1040 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 GJB4Q9NTQ9 266 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 ATAD3AQ9NVI7 634 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 MPP6Q9NZW5 540 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 SNX24Q9Y343 169 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 A2ML1A8K2U0 1454 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 IFT172Q9UG01 1749 aa9.27□□□□□ -0.93
LIMCH1-218ENST00000513024 SYNJ2BP-COX16A0A087WUM0 186 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 EFCAB14O75071 495 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 SEC24DO94855 1032 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 MFN2O95140 757 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 FGGP02679 453 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 P4HA1P13674 534 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 GYG1P46976 350 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 KCNJ6P48051 423 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CLK1P49759 484 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 BCAMP50895 628 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 BBS9Q3SYG4 887 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 USPL1Q5W0Q7 1092 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 NUDT18Q6ZVK8 323 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 NOP9Q86U38 636 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 DENND6AQ8IWF6 608 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 EPN3Q9H201 632 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 ADNPQ9H2P0 1102 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 COX16Q9P0S2 106 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 RWDD2AQ9UIY3 292 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 MAGED2Q9UNF1 606 aaPredicted RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 PCDHB6Q9Y5E3 794 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 ASNA1O43681 348 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 AFPP02771 609 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 POLR2BP30876 1174 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 VHLP40337 213 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 SERPINB8P50452 374 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 GRIN1Q05586 938 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 CPSF1Q10570 1443 aaKnown RBP9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 HIC1Q14526 733 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 MORF4L2Q15014 288 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 MICU2Q8IYU8 434 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 WDR60Q8WVS4 1066 aa9.26□□□□□ -0.93
LIMCH1-218ENST00000513024 ATP6V1G3Q96LB4 118 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms