RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 IER5LQ5T953 404 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 NAIF1Q69YI7 327 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 TMEM110Q86TL2 294 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 APLFQ8IW19 511 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP54-216ENST00000498143 SCYL1Q96KG9 808 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 SPACA7Q96KW9 195 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ZNF558Q96NG5 402 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GSDMAQ96QA5 445 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ACAD9Q9H845 621 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CDHR5Q9HBB8 845 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PALMDQ9NP74 551 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 BATF3Q9NR55 127 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 CCPG1Q9ULG6 757 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 BARX2Q9UMQ3 279 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 TRIM35Q9UPQ4 493 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PHF24Q9UPV7 400 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 USTQ9Y2C2 406 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 KDRP35968 1356 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 TNS1Q9HBL0 1735 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 LINC00854A0A1B0GVQ3 168 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 NDUFAB1O14561 156 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 LGR5O75473 907 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 ALDH1A2O94788 518 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 DCNP07585 359 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 ADD2P35612 726 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 CXCL12P48061 93 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 RAD51AP2Q09MP3 1159 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 GCKRQ14397 625 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SNCBQ16143 134 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 IER5Q5VY09 327 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 NLRP9Q7RTR0 991 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 PALM2Q8IXS6 379 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 HELQQ8TDG4 1101 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SCFD2Q8WU76 684 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 PRPF31Q8WWY3 499 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 GFM2Q969S9 779 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 AP1M1Q9BXS5 423 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 RBSNQ9H1K0 784 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 ALG13Q9NP73 1137 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 ABCA3Q99758 1704 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 PFASO15067 1338 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 C2CD2LO14523 706 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 MBTPS2O43462 519 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SORBS3O60504 671 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 TUBB4AP04350 444 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 CAP2P40123 477 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 ZAP70P43403 619 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 VCPP55072 806 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 TAP1Q03518 808 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 ZP2Q05996 745 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SUZ12Q15022 739 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 MAPK6Q16659 721 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 EPC2Q52LR7 807 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 FKBP15Q5T1M5 1219 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 CYP2U1Q7Z449 544 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 RAB11FIP4Q86YS3 637 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 ST13P4Q8IZP2 240 aaPredicted RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 CENPTQ96BT3 561 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 DHTKD1Q96HY7 919 aaPredicted RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 TNIP3Q96KP6 325 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 EDEM2Q9BV94 578 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 MOV10L1Q9BXT6 1211 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 PAPOLBQ9NRJ5 636 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 IGSF9Q9P2J2 1179 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 MAFFQ9ULX9 164 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SSX2IPQ9Y2D8 614 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 YBX2Q9Y2T7 364 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 MYO7AQ13402 2215 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 KLRG2A4D1S0 409 aaPredicted RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 H0Y626 953 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 HAX1O00165 279 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 GUCY1B2O75343 617 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 CDC45O75419 566 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 TRIM16O95361 564 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 FGFR1OPO95684 399 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 PDHA1P08559 390 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 GNL1P36915 607 aaPredicted RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 ST13P50502 369 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 PSMC6P62333 389 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 TUBA4AP68366 448 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 GFPT1Q06210 699 aaPredicted RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 CRYMQ14894 314 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 Q4G0T1 1027 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SLC44A4Q53GD3 710 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 CYP4A22Q5TCH4 519 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 LAIR1Q6GTX8 287 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 STK32CQ86UX6 486 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 PRSS33Q8NF86 280 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 UHMK1Q8TAS1 419 aaKnown RBP5.54□□□□□ -1.52
USP54-216ENST00000498143 CDHR1Q96JP9 859 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 SH3GL2Q99962 352 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 ABCG4Q9H172 646 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 GPR108Q9NPR9 543 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 TSC22D4Q9Y3Q8 395 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 GON4LQ3T8J9 2241 aa5.54□□□□□ -1.52
USP54-216ENST00000498143 C4AP0C0L4 1744 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 SERPINI2O75830 405 aa5.53□□□□□ -1.52
USP54-216ENST00000498143 AGFG2O95081 481 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms