RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 IFNKQ9P0W0 207 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 XPR1Q9UBH6 696 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 CCDC162PA2VCL2 907 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 RALAP11233 206 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 MTHFD1P11586 935 aaKnown RBP6.2□□□□□ -1.42
USF3-204ENST00000496826 CLCA4Q14CN2 919 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 CHRDL2Q6WN34 429 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 IFNL1Q8IU54 200 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 SSH3Q8TE77 659 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 FAM212AQ96EL1 285 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 C7orf25Q9BPX7 421 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 CHCHD6Q9BRQ6 235 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 MED10Q9BTT4 135 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 NSFL1CQ9UNZ2 370 aaKnown RBP6.2□□□□□ -1.42
USF3-204ENST00000496826 NCKAP1Q9Y2A7 1128 aa6.2□□□□□ -1.42
USF3-204ENST00000496826 ARIH1Q9Y4X5 557 aaPredicted RBP6.2□□□□□ -1.42
USF3-204ENST00000496826 GYG2O15488 501 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 AKAP8O43823 692 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 HUNKP57058 714 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 VBP1P61758 197 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 EEF1A2Q05639 463 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 RALGDSQ12967 914 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 MPP2Q14168 576 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ACAD11Q709F0 780 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 CYP4Z2PQ8N1L4 340 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 LRPPRCP42704 1394 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 P4HA2O15460 535 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ATP1A1P05023 1023 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 IL6P05231 212 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 RB1P06400 928 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 PTGS1P23219 599 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SARSP49591 514 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 RNF144AP50876 292 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 ORC2Q13416 577 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 USPL1Q5W0Q7 1092 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 KIAA1841Q6NSI8 718 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 AIFM2Q9BRQ8 373 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ARHGEF4Q9NR80 690 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 PIPSLA2A3N6 862 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SNPHO15079 494 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 CAND2O75155 1236 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 EPHB1P54762 984 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 NR1H3Q13133 447 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 TRIM16LQ309B1 348 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 KIAA1755Q5JYT7 1200 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ZCCHC8Q6NZY4 707 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 NFRKBQ6P4R8 1299 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 RYBPQ8N488 228 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 CAVIN3Q969G5 261 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SYT4Q9H2B2 425 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 CNOT10Q9H9A5 744 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 SPATA7Q9P0W8 599 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 IPPQ9Y573 584 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 AP4S1Q9Y587 144 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 PCDHGA4Q9Y5G9 962 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ZNF839A8K0R7 811 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 DPYSL4O14531 572 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 GATBO75879 557 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 NCF2P19878 526 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 KRT9P35527 623 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ADD1P35611 737 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 SOX5P35711 763 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 STAT2P52630 851 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ARF3P61204 181 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 ARF1P84077 181 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 S100A7AQ86SG5 101 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 RNFT2Q96EX2 444 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 FAM213AQ9BRX8 229 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SMURF2Q9HAU4 748 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 KPNA7A9QM74 516 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 K7ELQ4 463 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 SPTLC1O15269 473 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 UQCRFS1P1P0C7P4 283 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 GCFC2P16383 781 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 EIF5AP63241 154 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 CBX3Q13185 183 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 RARS2Q5T160 578 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 LVRNQ6Q4G3 990 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 CDH24Q86UP0 819 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 ATP6V1C2Q8NEY4 427 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SLC30A5Q8TAD4 765 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 THOC1Q96FV9 657 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 TCEANC2Q96MN5 208 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 SPRTNQ9H040 489 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 RUBCNLQ9H714 662 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 PIH1D3Q9NQM4 214 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 RWDD2AQ9UIY3 292 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 M0R2C6 588 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 GAS2O43903 313 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 WFS1O76024 890 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 GNAT1P11488 350 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 EPCAMP16422 314 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 PPP2R1BP30154 601 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 MAGEA10P43363 369 aaPredicted RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 C1DQ13901 141 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 TRIM25Q14258 630 aaKnown RBP6.19□□□□□ -1.42
USF3-204ENST00000496826 DLG3Q92796 817 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 FAM167BQ9BTA0 163 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 GOLPH3LQ9H4A5 285 aa6.19□□□□□ -1.42
USF3-204ENST00000496826 DNAJB4Q9UDY4 337 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms