RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 OFD1O75665 1012 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 CXCL14O95715 111 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 SKIP12755 728 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 NPEPPSP55786 919 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 ITIH3Q06033 890 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 TCF15Q12870 199 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 PPP2R5CQ13362 524 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 NOMO2Q5JPE7 1267 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 CPLX2Q6PUV4 134 aaKnown RBP13.9□□□□□ -0.18
CPSF3-204ENST00000489403 CATSPER4Q7RTX7 472 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 VPS52Q8N1B4 723 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 AUTS2Q8WXX7 1259 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 IGSF21Q96ID5 467 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 JPH2Q9BR39 696 aaPredicted RBP13.9□□□□□ -0.18
CPSF3-204ENST00000489403 PHF20Q9BVI0 1012 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 ADAM7Q9H2U9 754 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 IFT122Q9HBG6 1241 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 KCNMB3Q9NPA1 279 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 CYP26B1Q9NR63 512 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 TSHZ2Q9NRE2 1034 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 TBC1D13Q9NVG8 400 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 WRAP73Q9P2S5 460 aaPredicted RBP13.9□□□□□ -0.18
CPSF3-204ENST00000489403 INPP5FQ9Y2H2 1132 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 NR2E1Q9Y466 385 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 ARID2Q68CP9 1835 aa13.9□□□□□ -0.18
CPSF3-204ENST00000489403 C2CD4DB7Z1M9 353 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 ZNF623O75123 536 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 GALTP07902 379 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 CTSAP10619 480 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 QARSP47897 775 aaKnown RBP13.89□□□□□ -0.19
CPSF3-204ENST00000489403 RAB27AP51159 221 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 PTPN5P54829 565 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 VCPP55072 806 aaKnown RBP13.89□□□□□ -0.19
CPSF3-204ENST00000489403 SCRN1Q12765 414 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 BMS1Q14692 1282 aaKnown RBP13.89□□□□□ -0.19
CPSF3-204ENST00000489403 PPP4R3AQ6IN85 833 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 CES5AQ6NT32 575 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 GLB1LQ6UWU2 654 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 NEK8Q86SG6 692 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 ZBTB33Q86T24 672 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 DDX53Q86TM3 631 aaKnown RBP13.89□□□□□ -0.19
CPSF3-204ENST00000489403 ZNF579Q8NAF0 562 aaKnown RBP13.89□□□□□ -0.19
CPSF3-204ENST00000489403 NECTIN4Q96NY8 510 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 PRRX2Q99811 253 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 PDRG1Q9NUG6 133 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 AGPAT5Q9NUQ2 364 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 DNAJB4Q9UDY4 337 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 COL4A3BPQ9Y5P4 624 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 IRAK3Q9Y616 596 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 DENND4AQ7Z401 1863 aa13.89□□□□□ -0.19
CPSF3-204ENST00000489403 CCDC194A0A1B0GVG4 234 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 CARNS1A5YM72 827 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 B4GALT3O60512 393 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 DTNBO60941 627 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 WEE2P0C1S8 567 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 EPCAMP16422 314 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 SLC11A1P49279 550 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 POLGP54098 1239 aaPredicted RBP13.88□□□□□ -0.19
CPSF3-204ENST00000489403 RNASELQ05823 741 aaKnown RBP13.88□□□□□ -0.19
CPSF3-204ENST00000489403 RARS2Q5T160 578 aaKnown RBP13.88□□□□□ -0.19
CPSF3-204ENST00000489403 KIAA1841Q6NSI8 718 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 KANK3Q6NY19 840 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 AGMOQ6ZNB7 445 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 ZNF280BQ86YH2 543 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 C12orf76Q8N812 135 aaPredicted RBP13.88□□□□□ -0.19
CPSF3-204ENST00000489403 FEZF2Q8TBJ5 459 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 SLC7A3Q8WY07 619 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 HAS1Q92839 578 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 CEP170P1Q96L14 293 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 FAM20AQ96MK3 541 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 VN1R3Q9BXE9 311 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 GBP3Q9H0R5 595 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 DHX33Q9H6R0 707 aaKnown RBP13.88□□□□□ -0.19
CPSF3-204ENST00000489403 BMP2KQ9NSY1 1161 aaPredicted RBP13.88□□□□□ -0.19
CPSF3-204ENST00000489403 GJB4Q9NTQ9 266 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 STK36Q9NRP7 1315 aa13.88□□□□□ -0.19
CPSF3-204ENST00000489403 CCNT1O60563 726 aaKnown RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 DKC1O60832 514 aaKnown RBP eCLIP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 PDGFBP01127 241 aaPredicted RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 P4HBP07237 508 aaKnown RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 GCFC2P16383 781 aaKnown RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 MTHFRP42898 656 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 AFF1P51825 1210 aaKnown RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 GIT2Q14161 759 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 KREMEN2Q8NCW0 462 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 OXER1Q8TDS5 423 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 SLC22A17Q8WUG5 538 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 PSPC1Q8WXF1 523 aaKnown RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 TMEM143Q96AN5 459 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 PGBD4Q96DM1 585 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 RIPOR3Q96MK2 946 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 LXNQ9BS40 222 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 SLKQ9H2G2 1235 aaPredicted RBP13.87□□□□□ -0.19
CPSF3-204ENST00000489403 MINDY3Q9H8M7 445 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 DZANK1Q9NVP4 752 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 PPME1Q9Y570 386 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 PCDHB2Q9Y5E7 798 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 USP34Q70CQ2 3546 aa13.87□□□□□ -0.19
CPSF3-204ENST00000489403 PIEZO1Q92508 2521 aa13.86□□□□□ -0.19
CPSF3-204ENST00000489403 TBX3O15119 743 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms