RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 TEX2Q8IWB9 1127 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 INTS4Q96HW7 963 aaKnown RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 INPP4AQ96PE3 977 aaPredicted RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 RIC8AQ9NPQ8 531 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 TUBE1Q9UJT0 475 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 PLAGL2Q9UPG8 496 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 PCDHGC5Q9Y5F6 944 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 CDY2AQ9Y6F7 541 aa9.87□□□□□ -0.83
USP4-213ENST00000488520 MRPL42Q9Y6G3 142 aaKnown RBP9.87□□□□□ -0.83
USP4-213ENST00000488520 C2orf16Q68DN1 1984 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 JAK2O60674 1132 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 ATP9AO75110 1047 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 STAM2O75886 525 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 CTDNEP1O95476 244 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 ITGB1P05556 798 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 CD52P31358 61 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 NRIP1P48552 1158 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 GATMP50440 423 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 NR1H3Q13133 447 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 CUL4AQ13619 759 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 GRIK4Q16099 956 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 PKN1Q16512 942 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 FBXO47Q5MNV8 452 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 RSPH3Q86UC2 560 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 RTN4RL1Q86UN2 441 aaPredicted RBP9.86□□□□□ -0.83
USP4-213ENST00000488520 KLHL23Q8NBE8 558 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 SPPL3Q8TCT6 385 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 LINC01599Q8WXQ3 324 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 MSLNLQ96KJ4 702 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 FAM49AQ9H0Q0 323 aaPredicted RBP9.86□□□□□ -0.83
USP4-213ENST00000488520 AGO3Q9H9G7 860 aaKnown RBP9.86□□□□□ -0.83
USP4-213ENST00000488520 FAM86C1Q9NVL1 165 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 CLEC1BQ9P126 229 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 VPS54Q9P1Q0 977 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 BARX2Q9UMQ3 279 aaPredicted RBP9.86□□□□□ -0.83
USP4-213ENST00000488520 PCDHB9Q9Y5E1 797 aa9.86□□□□□ -0.83
USP4-213ENST00000488520 FRMPD4Q14CM0 1322 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 ZFHX2Q9C0A1 2572 aaPredicted RBP9.85□□□□□ -0.83
USP4-213ENST00000488520 GSTTP1A0A1W2PQM5 241 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 ESPNB1AK53 854 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 PER2O15055 1255 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 GLP2RO95838 553 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 ZNF76P36508 570 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 MRPS6P82932 125 aaKnown RBP9.85□□□□□ -0.83
USP4-213ENST00000488520 ZXDAP98168 799 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 RBM10P98175 930 aaKnown RBP9.85□□□□□ -0.83
USP4-213ENST00000488520 MARCH8Q5T0T0 291 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 SPOUT1Q5T280 376 aaKnown RBP9.85□□□□□ -0.83
USP4-213ENST00000488520 MCTP1Q6DN14 999 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 TAF2Q6P1X5 1199 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 TSHZ1Q6ZSZ6 1077 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 NLRX1Q86UT6 975 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 SUGP1Q8IWZ8 645 aaKnown RBP9.85□□□□□ -0.83
USP4-213ENST00000488520 BLIDQ8IZY5 108 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 LINC00528Q8N1L1 170 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 POF1BQ8WVV4 589 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 GLG1Q92896 1179 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 P2RX5Q93086 422 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 PPP2R3CQ969Q6 453 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 RPGRIP1Q96KN7 1286 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 SNX27Q96L92 541 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 PLVAPQ9BX97 442 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 ZMYND12Q9H0C1 365 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 PCDHA4Q9UN74 947 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 MYO15AQ9UKN7 3530 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 PTPRZ1P23471 2315 aaPredicted RBP9.85□□□□□ -0.83
USP4-213ENST00000488520 VPS13AQ96RL7 3174 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 CACNA1HO95180 2353 aa9.85□□□□□ -0.83
USP4-213ENST00000488520 CCDC194A0A1B0GVG4 234 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 ESYT2A0FGR8 921 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 LOC730098B7Z3J9 87 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 PIK3CDO00329 1044 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 EYA4O95677 639 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 FDPSP14324 419 aaKnown RBP9.84□□□□□ -0.83
USP4-213ENST00000488520 KCNA2P16389 499 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 KRT2P35908 639 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 GUCY1B3Q02153 619 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 TCF15Q12870 199 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 C6orf118Q5T5N4 469 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 JAKMIP3Q5VZ66 844 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 PCNX4Q63HM2 1172 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 BMP8AQ7Z5Y6 402 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 CMTR2Q8IYT2 770 aaKnown RBP9.84□□□□□ -0.83
USP4-213ENST00000488520 REXO1Q8N1G1 1221 aaKnown RBP9.84□□□□□ -0.83
USP4-213ENST00000488520 EFHBQ8N7U6 833 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 SMRP1Q8NCR6 262 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 MICAL1Q8TDZ2 1067 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 TRAPPC12Q8WVT3 735 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 SEPT1Q8WYJ6 367 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 SENP7Q9BQF6 1050 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 TLE6Q9H808 572 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 PRM3Q9NNZ6 103 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 ERAP1Q9NZ08 941 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 LRFN2Q9ULH4 789 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 PADI3Q9ULW8 664 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 PCDHA6Q9UN73 950 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 KCNJ14Q9UNX9 436 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 USP15Q9Y4E8 981 aaPredicted RBP9.84□□□□□ -0.83
USP4-213ENST00000488520 PCDHA8Q9Y5H6 950 aa9.84□□□□□ -0.83
USP4-213ENST00000488520 MBLAC1A4D2B0 266 aaPredicted RBP9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms