RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 DTWD2Q8NBA8 298 aa17.32■□□□□ 0.36
MCF2L-228ENST00000487354 SLC5A5Q92911 643 aa17.32■□□□□ 0.36
MCF2L-228ENST00000487354 KLHL5Q96PQ7 755 aa17.32■□□□□ 0.36
MCF2L-228ENST00000487354 UNC45AQ9H3U1 944 aa17.32■□□□□ 0.36
MCF2L-228ENST00000487354 SAMM50Q9Y512 469 aa17.32■□□□□ 0.36
MCF2L-228ENST00000487354 CEP250Q9BV73 2442 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 A0A087WZ62 844 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 CNPP09543 421 aaKnown RBP17.31■□□□□ 0.36
MCF2L-228ENST00000487354 TBC1D8BQ0IIM8 1120 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 SIX5Q8N196 739 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 RSPH1Q8WYR4 309 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 SCLT1Q96NL6 688 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 SH2D3AQ9BRG2 576 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 FDXACB1Q9BRP7 624 aaPredicted RBP17.31■□□□□ 0.36
MCF2L-228ENST00000487354 NIFKQ9BYG3 293 aaKnown RBP17.31■□□□□ 0.36
MCF2L-228ENST00000487354 NRBP2Q9NSY0 501 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 FAM105AQ9NUU6 356 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 COL4A3Q01955 1670 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 MYH15Q9Y2K3 1946 aa17.31■□□□□ 0.36
MCF2L-228ENST00000487354 KRBA1A5PL33 1030 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 CHMP2AO43633 222 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 ZNF623O75123 536 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 DDHD2O94830 711 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 LETM2Q2VYF4 491 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 TSGA10IPQ3SY00 556 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 AGMOQ6ZNB7 445 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 OTOP3Q7RTS5 596 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 RIT2Q99578 217 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 GCOM2Q9BZD3 368 aaPredicted RBP17.3■□□□□ 0.36
MCF2L-228ENST00000487354 PIN4Q9Y237 131 aaKnown RBP17.3■□□□□ 0.36
MCF2L-228ENST00000487354 INPP5FQ9Y2H2 1132 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 PATJQ8NI35 1801 aa17.3■□□□□ 0.36
MCF2L-228ENST00000487354 PSMD10O75832 226 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 EFEMP2O95967 443 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 BMS1Q14692 1282 aaKnown RBP17.29■□□□□ 0.36
MCF2L-228ENST00000487354 MTERF2Q49AM1 385 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 TWF2Q6IBS0 349 aaKnown RBP17.29■□□□□ 0.36
MCF2L-228ENST00000487354 GLB1LQ6UWU2 654 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 C15orf39Q6ZRI6 1047 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 PPFIBP1Q86W92 1011 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 KSR1Q8IVT5 923 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 RSAD2Q8WXG1 361 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 ACSF2Q96CM8 615 aaPredicted RBP17.29■□□□□ 0.36
MCF2L-228ENST00000487354 RTP3Q9BQQ7 232 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 C6orf50Q9HD87 102 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 MARCH5Q9NX47 278 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 SEPT9Q9UHD8 586 aaPredicted RBP17.29■□□□□ 0.36
MCF2L-228ENST00000487354 TCEAL9Q9UHQ7 104 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 CACNA1IQ9P0X4 2223 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 MIA3Q5JRA6 1907 aa17.29■□□□□ 0.36
MCF2L-228ENST00000487354 PRPF3O43395 683 aaKnown RBP17.28■□□□□ 0.36
MCF2L-228ENST00000487354 PAPLNO95428 1278 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 SSBP05455 408 aaKnown RBP eCLIP17.28■□□□□ 0.36
MCF2L-228ENST00000487354 CPA1P15085 419 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 SFPQP23246 707 aaKnown RBP eCLIP17.28■□□□□ 0.36
MCF2L-228ENST00000487354 SFNP31947 248 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 JAK3P52333 1124 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 NTRK3Q16288 839 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 POTEGQ6S5H5 508 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 ZNF410Q86VK4 478 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 RNF168Q8IYW5 571 aaPredicted RBP17.28■□□□□ 0.36
MCF2L-228ENST00000487354 CMASQ8NFW8 434 aaPredicted RBP17.28■□□□□ 0.36
MCF2L-228ENST00000487354 RMDN1Q96DB5 314 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 GBP3Q9H0R5 595 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 IFT122Q9HBG6 1241 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 NCOR2Q9Y618 2525 aa17.28■□□□□ 0.36
MCF2L-228ENST00000487354 MED19A0JLT2 244 aaPredicted RBP17.27■□□□□ 0.36
MCF2L-228ENST00000487354 CARNS1A5YM72 827 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 GAS7O60861 476 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 RAB27AP51159 221 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 UBXN11Q5T124 520 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 LRCH2Q5VUJ6 765 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 PHKBQ93100 1093 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 CCDC136Q96JN2 1154 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 MAN1C1Q9NR34 630 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 AGPAT5Q9NUQ2 364 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 DLGAP2Q9P1A6 1054 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 IGSF9Q9P2J2 1179 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 PCDHB2Q9Y5E7 798 aa17.27■□□□□ 0.36
MCF2L-228ENST00000487354 MAFO75444 373 aaPredicted RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 CFHP08603 1231 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 KLRC2P26717 231 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 RNASELQ05823 741 aaKnown RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 XKR3Q5GH77 459 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 RNF20Q5VTR2 975 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 ANO5Q75V66 913 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 TAS1R1Q7RTX1 841 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 MRPL10Q7Z7H8 261 aaKnown RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 RHPN2Q8IUC4 686 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 RDM1Q8NG50 284 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 CCDC12Q8WUD4 166 aaPredicted RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 ZNF707Q96C28 371 aaPredicted RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 MYADMQ96S97 322 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 TEKT3Q9BXF9 490 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 EMILIN2Q9BXX0 1053 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 RHOBTB2Q9BYZ6 727 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 MINDY3Q9H8M7 445 aa17.26■□□□□ 0.35
MCF2L-228ENST00000487354 WDR6Q9NNW5 1121 aaKnown RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 SUCLA2Q9P2R7 463 aaPredicted RBP17.26■□□□□ 0.35
MCF2L-228ENST00000487354 EPS15L1Q9UBC2 864 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms