RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CCDC6Q16204 474 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 CLLU1OSQ5K130 101 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 FAM228AQ86W67 206 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 TMEFF1Q8IYR6 380 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 RNF169Q8NCN4 708 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 HELQQ8TDG4 1101 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 ZNF707Q96C28 371 aaPredicted RBP9.23□□□□□ -0.93
USP54-211ENST00000474929 GPRASP2Q96D09 838 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 NT5C3AQ9H0P0 336 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 ADAMTS10Q9H324 1103 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 C1orf115Q9H7X2 142 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP54-211ENST00000474929 ACACAQ13085 2346 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 COL1A2P08123 1366 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 LAMA5O15230 3695 aa9.23□□□□□ -0.93
USP54-211ENST00000474929 DOCK5Q9H7D0 1870 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 FREM2Q5SZK8 3169 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 A0A0U1RQF3 1178 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 GIPC1O14908 333 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 ARHGAP6O43182 974 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 HYAL3O43820 417 aaPredicted RBP9.22□□□□□ -0.93
USP54-211ENST00000474929 ECI2O75521 394 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 SOD2P04179 222 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 FGD1P98174 961 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 FZD5Q13467 585 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 MTHFD1LQ6UB35 978 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 GLB1LQ6UWU2 654 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 TMEM57Q8N5G2 664 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 TMEM40Q8WWA1 233 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 GAB3Q8WWW8 586 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 GPATCH3Q96I76 525 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 RPS6KC1Q96S38 1066 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 UBA5Q9GZZ9 404 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 CCDC86Q9H6F5 360 aaKnown RBP9.22□□□□□ -0.93
USP54-211ENST00000474929 TMEM9BQ9NQ34 198 aa9.22□□□□□ -0.93
USP54-211ENST00000474929 NDRG2Q9UN36 371 aaKnown RBP9.22□□□□□ -0.93
USP54-211ENST00000474929 ZNF462Q96JM2 2506 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 C4orf47A7E2U8 309 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 CYSRT1A8MQ03 144 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 OPLAHO14841 1288 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 XYLBO75191 536 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 RPP40O75818 363 aaKnown RBP9.21□□□□□ -0.94
USP54-211ENST00000474929 GALTP07902 379 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 HNRNPA1P09651 372 aaKnown RBP eCLIP9.21□□□□□ -0.94
USP54-211ENST00000474929 FGRP09769 529 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 GOLGA8HP0CJ92 632 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 NCLP19338 710 aaKnown RBP9.21□□□□□ -0.94
USP54-211ENST00000474929 HOXA9P31269 272 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 GLUD2P49448 558 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 AK2P54819 239 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 MRPS9P82933 396 aaKnown RBP9.21□□□□□ -0.94
USP54-211ENST00000474929 SATB1Q01826 763 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 SEMA3FQ13275 785 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 PLCB4Q15147 1175 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 ELF2Q15723 593 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 AXDND1Q5T1B0 1012 aaPredicted RBP9.21□□□□□ -0.94
USP54-211ENST00000474929 PCNX4Q63HM2 1172 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 PDXDC2PQ6P474 469 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 PLPPR4Q7Z2D5 763 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 DGKHQ86XP1 1220 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 FTSJ3Q8IY81 847 aaKnown RBP9.21□□□□□ -0.94
USP54-211ENST00000474929 GPR65Q8IYL9 337 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 FEZF2Q8TBJ5 459 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 FAM3CQ92520 227 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 FRAT1Q92837 279 aaPredicted RBP9.21□□□□□ -0.94
USP54-211ENST00000474929 TMEM175Q9BSA9 504 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 HERC2P3Q9BVR0 1158 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 TRPV5Q9NQA5 729 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 HEBP1Q9NRV9 189 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 F5P12259 2224 aa9.21□□□□□ -0.94
USP54-211ENST00000474929 TENM4Q6N022 2769 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 TRIM6-TRIM34B2RNG4 842 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 K7ESF4 209 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 M0R2C6 588 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 CAPN9O14815 690 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 TEX28O15482 410 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 RFPL2O75678 378 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 TOP3BO95985 862 aaKnown RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 POU2F2P09086 479 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 CCDC192P0DO97 292 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 HOXA13P31271 388 aaPredicted RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 CTDSPL2Q05D32 466 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 SRSF5Q13243 272 aaKnown RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 KARSQ15046 597 aaKnown RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 ZNF423Q2M1K9 1284 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 LIN9Q5TKA1 542 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 ZKSCAN2Q63HK3 967 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 LARP1BQ659C4 914 aaKnown RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 KIAA1211LQ6NV74 962 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 ZNF598Q86UK7 904 aaKnown RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 FCHSD1Q86WN1 690 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 TMEM173Q86WV6 379 aaPredicted RBP9.2□□□□□ -0.94
USP54-211ENST00000474929 PNMA1Q8ND90 353 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 URGCPQ8TCY9 931 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 SLC39A7Q92504 469 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 FGF13Q92913 245 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 IRF7Q92985 503 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 LRIG1Q96JA1 1093 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 OSMRQ99650 979 aa9.2□□□□□ -0.94
USP54-211ENST00000474929 CLMPQ9H6B4 373 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms