RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 RUSC1Q9BVN2 902 aa21■□□□□ 0.95
PTCD3-210ENST00000473829 DACT1Q9NYF0 836 aa21■□□□□ 0.95
PTCD3-210ENST00000473829 FBXO2Q9UK22 296 aaPredicted RBP21■□□□□ 0.95
PTCD3-210ENST00000473829 MTCH2Q9Y6C9 303 aa21■□□□□ 0.95
PTCD3-210ENST00000473829 LRRIQ4A6NIV6 560 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 TBKBP1A7MCY6 615 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 INO80B-WBP1J3KQ70 363 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 TSPAN1O60635 241 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 CTNNB1P35222 781 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 AMHR2Q16671 573 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 TWF2Q6IBS0 349 aaKnown RBP20.99■□□□□ 0.95
PTCD3-210ENST00000473829 RNF169Q8NCN4 708 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 SAMD11Q96NU1 681 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 TRAIPQ9BWF2 469 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 NFKBIZQ9BYH8 718 aa20.99■□□□□ 0.95
PTCD3-210ENST00000473829 POU3F3P20264 500 aaPredicted RBP20.98■□□□□ 0.95
PTCD3-210ENST00000473829 LONP1P36776 959 aaKnown RBP20.98■□□□□ 0.95
PTCD3-210ENST00000473829 CLLU1OSQ5K130 101 aa20.98■□□□□ 0.95
PTCD3-210ENST00000473829 UBXN11Q5T124 520 aa20.98■□□□□ 0.95
PTCD3-210ENST00000473829 CDCA2Q69YH5 1023 aaPredicted RBP20.98■□□□□ 0.95
PTCD3-210ENST00000473829 USP49Q70CQ1 688 aa20.98■□□□□ 0.95
PTCD3-210ENST00000473829 DAW1Q8N136 415 aa20.98■□□□□ 0.95
PTCD3-210ENST00000473829 CSRNP2Q9H175 543 aa20.98■□□□□ 0.95
PTCD3-210ENST00000473829 FAM105AQ9NUU6 356 aa20.98■□□□□ 0.95
PTCD3-210ENST00000473829 MEIS3P2A8K0S8 358 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 B4GALT5O43286 388 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 ERLIN2O94905 339 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 ZSCAN22P10073 491 aaPredicted RBP20.97■□□□□ 0.95
PTCD3-210ENST00000473829 BMPR1AP36894 532 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 MAPK7Q13164 816 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 KARSQ15046 597 aaKnown RBP20.97■□□□□ 0.95
PTCD3-210ENST00000473829 CCDC85BQ15834 202 aaPredicted RBP20.97■□□□□ 0.95
PTCD3-210ENST00000473829 LONRF3Q496Y0 759 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 SPECC1Q5M775 1068 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 RINT1Q6NUQ1 792 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 C1orf186Q6ZWK4 172 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 MICALL1Q8N3F8 863 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 PPM1EQ8WY54 764 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 LPPQ93052 612 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 CPB2Q96IY4 423 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 CLIC6Q96NY7 704 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 CASD1Q96PB1 797 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 KIFC3Q9BVG8 833 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 NT5C3AQ9H0P0 336 aa20.97■□□□□ 0.95
PTCD3-210ENST00000473829 RNF216Q9NWF9 866 aaPredicted RBP20.97■□□□□ 0.95
PTCD3-210ENST00000473829 PLXNA4Q9HCM2 1894 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 C5orf67F2Z3F1 127 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 H3BNC9 293 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 F13A1P00488 732 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 UBA7P41226 1012 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 NASPP49321 788 aaPredicted RBP20.96■□□□□ 0.95
PTCD3-210ENST00000473829 SLC12A3P55017 1021 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 EPSTI1Q96J88 318 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 CDK5RAP3Q96JB5 506 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 TMEM117Q9H0C3 514 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 BLOC1S4Q9NUP1 217 aa20.96■□□□□ 0.95
PTCD3-210ENST00000473829 SRPRBQ9Y5M8 271 aaKnown RBP20.96■□□□□ 0.95
PTCD3-210ENST00000473829 TTLL13PA6NNM8 815 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 HIP1RO75146 1068 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 EOMESO95936 686 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 EDN1P05305 212 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 SSBP05455 408 aaKnown RBP eCLIP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 ARF4P18085 180 aaPredicted RBP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 PLCG1P19174 1290 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 NAMPTP43490 491 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 GPM6BQ13491 265 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 SLC39A14Q15043 492 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 LRRC55Q6ZSA7 311 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 SYT2Q8N9I0 419 aaPredicted RBP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 HELQQ8TDG4 1101 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 KIFAP3Q92845 792 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 EIF2AQ9BY44 585 aaKnown RBP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 CCDC113Q9H0I3 377 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 CWH43Q9H720 699 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 TYW1Q9NV66 732 aaKnown RBP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 TFIP11Q9UBB9 837 aaKnown RBP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 RWDD3Q9Y3V2 267 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 PCDHB2Q9Y5E7 798 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 MORC2Q9Y6X9 1032 aaPredicted RBP20.95■□□□□ 0.94
PTCD3-210ENST00000473829 MYH11P35749 1972 aa20.95■□□□□ 0.94
PTCD3-210ENST00000473829 XIRP2A4UGR9 3374 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 SPTBN5Q9NRC6 3674 aaKnown RBP20.94■□□□□ 0.94
PTCD3-210ENST00000473829 HOXA2O43364 376 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 SLC26A4O43511 780 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 GTPBP6O43824 516 aaPredicted RBP20.94■□□□□ 0.94
PTCD3-210ENST00000473829 ZNF623O75123 536 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 PLA2G4BP0C869 781 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 RAB27AP51159 221 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 RAD51AP2Q09MP3 1159 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 PCBP1Q15365 356 aaKnown RBP eCLIP20.94■□□□□ 0.94
PTCD3-210ENST00000473829 FOXD4L6Q3SYB3 417 aaPredicted RBP20.94■□□□□ 0.94
PTCD3-210ENST00000473829 FOXD4L3Q6VB84 417 aaPredicted RBP20.94■□□□□ 0.94
PTCD3-210ENST00000473829 CDR2LQ86X02 465 aaPredicted RBP20.94■□□□□ 0.94
PTCD3-210ENST00000473829 KCTD17Q8N5Z5 321 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 LINC00301Q8NCQ3 95 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 CALML4Q96GE6 196 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 CCSER1Q9C0I3 900 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 PRDM6Q9NQX0 595 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 USP20Q9Y2K6 914 aa20.94■□□□□ 0.94
PTCD3-210ENST00000473829 NPHP3-ACAD11A0A0J9YXS1 232 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms