RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 NNTQ13423 1086 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 NEDD9Q14511 834 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 B4GALNT3Q6L9W6 998 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 TAF2Q6P1X5 1199 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 USP17L6PQ6QN14 398 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 TMC5Q6UXY8 1006 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 MFSD6Q6ZSS7 791 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 TMC7Q7Z402 723 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 TMEM173Q86WV6 379 aaPredicted RBP6.09□□□□□ -1.43
PTPN4-209ENST00000469511 DGKHQ86XP1 1220 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 HOMER1Q86YM7 354 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 ENAHQ8N8S7 591 aaPredicted RBP6.09□□□□□ -1.43
PTPN4-209ENST00000469511 TPCN2Q8NHX9 752 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 CASD1Q96PB1 797 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 ADAM2Q99965 735 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 HINFPQ9BQA5 517 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 CELF4Q9BZC1 486 aaKnown RBP6.09□□□□□ -1.43
PTPN4-209ENST00000469511 KCNK12Q9HB15 430 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 TOR4AQ9NXH8 423 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 PGPEP1Q9NXJ5 209 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 DLGAP2Q9P1A6 1054 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 MAD2L2Q9UI95 211 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 CA14Q9ULX7 337 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 GINS2Q9Y248 185 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 RBM19Q9Y4C8 960 aaKnown RBP6.09□□□□□ -1.43
PTPN4-209ENST00000469511 PCDHB7Q9Y5E2 793 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 ZFYVE26Q68DK2 2539 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 FAM208BQ5VWN6 2430 aa6.09□□□□□ -1.43
PTPN4-209ENST00000469511 FRMPD4Q14CM0 1322 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 KLRF2D3W0D1 207 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 GCOM1H8Y6P7 765 aaPredicted RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 EOMESO95936 686 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 PARP1P09874 1014 aaKnown RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 POLR2MP0CAP2 368 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 TGM1P22735 817 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 FAM189BP81408 668 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 PLCB3Q01970 1234 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 PAK2Q13177 524 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 NMIQ13287 307 aaPredicted RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 TDGQ13569 410 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 PLCB4Q15147 1175 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 ASPRV1Q53RT3 343 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 KIAA1841Q6NSI8 718 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 CES5AQ6NT32 575 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 KCNT2Q6UVM3 1135 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 CYP2U1Q7Z449 544 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 MRPL43Q8N983 215 aaKnown RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 TDRD5Q8NAT2 981 aaKnown RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 SLC22A17Q8WUG5 538 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 BCL7CQ8WUZ0 217 aaPredicted RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 PIBF1Q8WXW3 757 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 RUBCNQ92622 972 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 CASP10Q92851 521 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 KLF16Q9BXK1 252 aaPredicted RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 FTHL17Q9BXU8 183 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 MAF1Q9H063 256 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 KAT14Q9H8E8 782 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 CYLDQ9NQC7 956 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 CYP26B1Q9NR63 512 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 RGS18Q9NS28 235 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 ZSWIM5Q9P217 1185 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 DBR1Q9UK59 544 aaKnown RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 FBXL21Q9UKT6 434 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 ZNF215Q9UL58 517 aaPredicted RBP6.08□□□□□ -1.44
PTPN4-209ENST00000469511 DUSP12Q9UNI6 340 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 ST3GAL5Q9UNP4 418 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 WASF2Q9Y6W5 498 aa6.08□□□□□ -1.44
PTPN4-209ENST00000469511 TTC41PQ6P2S7 1318 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 ZBTB5O15062 677 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 FIBPO43427 364 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 B4GALT3O60512 393 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 CXCL14O95715 111 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 ITGB5P18084 799 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 CA8P35219 290 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 MTHFRP42898 656 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 METAP2P50579 478 aaKnown RBP eCLIP6.07□□□□□ -1.44
PTPN4-209ENST00000469511 KRT76Q01546 638 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 ITIH3Q06033 890 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 COL9A3Q14050 684 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-209ENST00000469511 DSC3Q14574 896 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 SEC23AQ15436 765 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 MCMDC2Q4G0Z9 681 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 IER5Q5VY09 327 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 PDE12Q6L8Q7 609 aaKnown RBP6.07□□□□□ -1.44
PTPN4-209ENST00000469511 MTHFD1LQ6UB35 978 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 CYB5R4Q7L1T6 521 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 RSPH3Q86UC2 560 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 FAM228AQ86W67 206 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 CYP4X1Q8N118 509 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 SLC39A11Q8N1S5 342 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 SEPT1Q8WYJ6 367 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 GLG1Q92896 1179 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 ZNF668Q96K58 619 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-209ENST00000469511 NECTIN4Q96NY8 510 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 ZSCAN10Q96SZ4 725 aaPredicted RBP6.07□□□□□ -1.44
PTPN4-209ENST00000469511 RTP3Q9BQQ7 232 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 VN1R3Q9BXE9 311 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 FOXQ1Q9C009 403 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 RIOX1Q9H6W3 641 aa6.07□□□□□ -1.44
PTPN4-209ENST00000469511 TBC1D17Q9HA65 648 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms