RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 RBAK-RBAKDNI3L0D1 243 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 IFNB1P01574 187 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 IL1R1P14778 569 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 MAPK4P31152 587 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 VAMP7P51809 220 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 PRELPP51888 382 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 CBWD6Q4V339 395 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 CBWD3Q5JTY5 395 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 CBWD5Q5RIA9 395 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 C6orf118Q5T5N4 469 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 NUP85Q9BW27 656 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 SEMA4AQ9H3S1 761 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 TRAF3IP3Q9Y228 551 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 NUP98P52948 1817 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 TISP43B9A030 160 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 GAS8O95995 478 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 TMEM253P0C7T8 217 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 KRT15P19012 456 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 IFI35P80217 286 aaPredicted RBP12.78□□□□□ -0.36
MSH6-204ENST00000445503 OGFOD1Q8N543 542 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 AGPAT3Q9NRZ7 376 aa12.78□□□□□ -0.36
MSH6-204ENST00000445503 POC1B-GALNT4F8VUJ3 575 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 TRIM37O94972 964 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 TNFRSF8P28908 595 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 SMTNP53814 917 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 C2CD6Q53TS8 623 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 ARHGAP27Q6ZUM4 889 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 FAM47EQ6ZV65 393 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 INTS8Q75QN2 995 aaKnown RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 LNX1Q8TBB1 728 aaPredicted RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 SCFD2Q8WU76 684 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 FNBP1Q96RU3 617 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.77□□□□□ -0.36
MSH6-204ENST00000445503 SLC16A3O15427 465 aaKnown RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 CLDN3O15551 220 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 TNNI1P19237 187 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 UAP1Q16222 522 aaPredicted RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 AGBL2Q5U5Z8 902 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 LRRC34Q8IZ02 419 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 CERS5Q8N5B7 392 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 ZNF564Q8TBZ8 553 aaPredicted RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 CHURC1Q8WUH1 139 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 POMGNT1Q8WZA1 660 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 KLHL29Q96CT2 875 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 NCAPGQ9BPX3 1015 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 CNOT8Q9UFF9 292 aaKnown RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 CCPG1Q9ULG6 757 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 PRR12Q9ULL5 1215 aa12.77□□□□□ -0.36
MSH6-204ENST00000445503 MRPL11Q9Y3B7 192 aaKnown RBP12.77□□□□□ -0.36
MSH6-204ENST00000445503 SYNGAP1Q96PV0 1343 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 ATF2P15336 505 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 BFSP1Q12934 665 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 BYSLQ13895 437 aaKnown RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 RNF207Q6ZRF8 634 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 BARGINQ6ZT62 677 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.77□□□□□ -0.37
MSH6-204ENST00000445503 KRT35Q92764 455 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 ARHGEF2Q92974 986 aaKnown RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 RSRC1Q96IZ7 334 aaKnown RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 ACCSQ96QU6 501 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 TCHPQ9BT92 498 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 ANAPC7Q9UJX3 599 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 SCAF8Q9UPN6 1271 aaKnown RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 EIF4E1BA6NMX2 242 aaKnown RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 IPO5O00410 1097 aaKnown RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 ATF7P17544 494 aaPredicted RBP12.77□□□□□ -0.37
MSH6-204ENST00000445503 ADCY2Q08462 1091 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 NEDD9Q14511 834 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 WDR11Q9BZH6 1224 aa12.77□□□□□ -0.37
MSH6-204ENST00000445503 MEIS2O14770 477 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 SPATA31C1P0DKV0 1188 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 EIF2AK2P19525 551 aaKnown RBP12.76□□□□□ -0.37
MSH6-204ENST00000445503 ECE1P42892 770 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 RWDD2BP57060 319 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 SRRM1Q8IYB3 904 aaKnown RBP12.76□□□□□ -0.37
MSH6-204ENST00000445503 NT5C1BQ96P26 610 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 VCPKMTQ9H867 229 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 VPS37BQ9H9H4 285 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 KCNMB3Q9NPA1 279 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 ASTN1O14525 1302 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 FAM187AA6NFU0 413 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 ALDH1B1P30837 517 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 MARCKSL1P49006 195 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 MFAP3P55082 362 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 LACTBP83111 547 aaPredicted RBP12.76□□□□□ -0.37
MSH6-204ENST00000445503 WDR44Q5JSH3 913 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 ARMC9Q7Z3E5 817 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 MREGQ8N565 214 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 PIK3R5Q8WYR1 880 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 ANAPC5Q9UJX4 755 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 TAF1P21675 1872 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 TCP11X1B4DZS4 312 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 PODXLO00592 558 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 ATP5DP30049 168 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 CHRNA3P32297 505 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 SLMAPQ14BN4 828 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 CYB5D1Q6P9G0 228 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 USP37Q86T82 979 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 PASD1Q8IV76 773 aa12.76□□□□□ -0.37
MSH6-204ENST00000445503 KIRREL3Q8IZU9 778 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms