RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 TRPM4Q8TD43 1214 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 SGIP1Q9BQI5 828 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 GPRC5CQ9NQ84 441 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 GPRC5DQ9NZD1 345 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 EHD2Q9NZN4 543 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 WDR90Q96KV7 1748 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 A0A0U1RQG5 324 aaPredicted RBP18.16■□□□□ 0.5
LIMK1-203ENST00000435201 LRRIQ3A6PVS8 624 aaPredicted RBP18.16■□□□□ 0.5
LIMK1-203ENST00000435201 TISP43B9A030 160 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 PSAPP07602 524 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 TNFRSF8P28908 595 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 MATR3P43243 847 aaKnown RBP eCLIP18.16■□□□□ 0.5
LIMK1-203ENST00000435201 TNNT3P45378 269 aaPredicted RBP18.16■□□□□ 0.5
LIMK1-203ENST00000435201 KIF22Q14807 665 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 GNPTABQ3T906 1256 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 PRAMEF18Q5VWM3 479 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 MAP4K3Q8IVH8 894 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 TPCN2Q8NHX9 752 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 SPIRE2Q8WWL2 714 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 PBKQ96KB5 322 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 SH2D3AQ9BRG2 576 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 SYT11Q9BT88 431 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 MED4Q9NPJ6 270 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 RBM12Q9NTZ6 932 aaKnown RBP18.16■□□□□ 0.5
LIMK1-203ENST00000435201 HOXC10Q9NYD6 342 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 CYP39A1Q9NYL5 469 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 GGA3Q9NZ52 723 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 SMARCAL1Q9NZC9 954 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 STIM2Q9P246 746 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 GABBR1Q9UBS5 961 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 TBX20Q9UMR3 447 aa18.16■□□□□ 0.5
LIMK1-203ENST00000435201 NCANO14594 1321 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 SSC5DA1L4H1 1573 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 KIF4AO95239 1232 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 DLG4P78352 724 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 SUPT20HL1Q3ZLR7 823 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 EPC2Q52LR7 807 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 HSP90B2PQ58FF3 399 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 PHLDB3Q6NSJ2 640 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 TMEM161BQ8NDZ6 487 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 OLIG1Q8TAK6 271 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 MS4A14Q96JA4 679 aa18.15■□□□□ 0.5
LIMK1-203ENST00000435201 JPH1Q9HDC5 661 aaPredicted RBP18.15■□□□□ 0.5
LIMK1-203ENST00000435201 CCDC169A6NNP5 214 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 ZMYND10O75800 440 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 TMEM253P0C7T8 217 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 NPTX2P47972 431 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 PPP3CAQ08209 521 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 SLFN11Q7Z7L1 901 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 FAM71BQ8TC56 605 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 AENQ8WTP8 325 aaKnown RBP18.14■□□□□ 0.49
LIMK1-203ENST00000435201 CEP170P1Q96L14 293 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 SELENOOQ9BVL4 669 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 A1CFQ9NQ94 594 aaKnown RBP18.14■□□□□ 0.49
LIMK1-203ENST00000435201 KMT5AQ9NQR1 393 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 USP20Q9Y2K6 914 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 AFG3L2Q9Y4W6 797 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 AARSP49588 968 aaKnown RBP eCLIP18.14■□□□□ 0.49
LIMK1-203ENST00000435201 MXI1P50539 228 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 GALCP54803 685 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 RTP1P59025 263 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 ARHGAP44Q17R89 818 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 C1orf220Q5T0J3 134 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 GLYCTKQ8IVS8 523 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 GPC2Q8N158 579 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 MCPH1Q8NEM0 835 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 NTPCRQ9BSD7 190 aaKnown RBP18.14■□□□□ 0.49
LIMK1-203ENST00000435201 SLC9A2Q9UBY0 812 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 DMGDHQ9UI17 866 aaKnown RBP18.14■□□□□ 0.49
LIMK1-203ENST00000435201 HPCAL4Q9UM19 191 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 PACSIN2Q9UNF0 486 aaPredicted RBP18.14■□□□□ 0.49
LIMK1-203ENST00000435201 FZD1Q9UP38 647 aa18.14■□□□□ 0.49
LIMK1-203ENST00000435201 DICER1Q9UPY3 1922 aaKnown RBP18.13■□□□□ 0.49
LIMK1-203ENST00000435201 SPDYE16A6NNV3 312 aaPredicted RBP18.13■□□□□ 0.49
LIMK1-203ENST00000435201 DGAT1O75907 488 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 RGS20O76081 388 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 MYBL2P10244 700 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 TNFAIP3P21580 790 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 ABCD1P33897 745 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 GCLMP48507 274 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 DNA2P51530 1060 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 SH3D19Q5HYK7 790 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 CCDC102AQ96A19 550 aa18.13■□□□□ 0.49
LIMK1-203ENST00000435201 ZCCHC17Q9NP64 241 aaKnown RBP18.13■□□□□ 0.49
LIMK1-203ENST00000435201 UBE2TQ9NPD8 197 aaPredicted RBP18.13■□□□□ 0.49
LIMK1-203ENST00000435201 DENND3A2RUS2 1198 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 SPATA31C2B4DYI2 1134 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 KCNK3O14649 394 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 ZNF862O60290 1169 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 STBD1O95210 358 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 TNNC1P63316 161 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 SNRNP35Q16560 246 aaKnown RBP18.12■□□□□ 0.49
LIMK1-203ENST00000435201 TRMT1LQ7Z2T5 733 aaKnown RBP18.12■□□□□ 0.49
LIMK1-203ENST00000435201 PEX26Q7Z412 305 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 USP38Q8NB14 1042 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.12■□□□□ 0.49
LIMK1-203ENST00000435201 ACTRT1Q8TDG2 376 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 HDAC7Q8WUI4 952 aa18.12■□□□□ 0.49
LIMK1-203ENST00000435201 CTNNBL1Q8WYA6 563 aaPredicted RBP18.12■□□□□ 0.49
LIMK1-203ENST00000435201 RFFLQ8WZ73 363 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms