RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 KLHDC9Q8NEP7 349 aa23.05■■□□□ 1.28
TPM1-208ENST00000404484 OR6J1Q8NGC5 347 aa23.05■■□□□ 1.28
TPM1-208ENST00000404484 EEF2KMTQ96G04 330 aa23.05■■□□□ 1.28
TPM1-208ENST00000404484 POLR3FQ9H1D9 316 aaPredicted RBP23.05■■□□□ 1.28
TPM1-208ENST00000404484 ZNF215Q9UL58 517 aaPredicted RBP23.05■■□□□ 1.28
TPM1-208ENST00000404484 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.05■■□□□ 1.28
TPM1-208ENST00000404484 ZMYM2Q9UBW7 1377 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 A0A1W2PQC6 194 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 NRDCO43847 1150 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 MSNP26038 577 aaKnown RBP23.04■■□□□ 1.28
TPM1-208ENST00000404484 GJA9P57773 515 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 TBC1D8BQ0IIM8 1120 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 PLCB4Q15147 1175 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 FKBP15Q5T1M5 1219 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 TRIM50Q86XT4 487 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 AFG1LQ8WV93 481 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 CEP89Q96ST8 783 aa23.04■■□□□ 1.28
TPM1-208ENST00000404484 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.04■■□□□ 1.281e-6■■■□□ 19.1
TPM1-208ENST00000404484 SLC16A4O15374 487 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 TGFB1I1O43294 461 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 MAFO75444 373 aaPredicted RBP23.03■■□□□ 1.28
TPM1-208ENST00000404484 LGALS2P05162 132 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 TPM1P09493 284 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 HOXD8P13378 290 aaPredicted RBP23.03■■□□□ 1.28
TPM1-208ENST00000404484 SFPQP23246 707 aaKnown RBP eCLIP23.03■■□□□ 1.28
TPM1-208ENST00000404484 MARK3P27448 753 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 TRIM14Q14142 442 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 CCSAPQ6IQ19 270 aaPredicted RBP23.03■■□□□ 1.28
TPM1-208ENST00000404484 TCP11Q8WWU5 503 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 UPF3AQ9H1J1 476 aaKnown RBP23.03■■□□□ 1.28
TPM1-208ENST00000404484 METTL14Q9HCE5 456 aaKnown RBP23.03■■□□□ 1.28
TPM1-208ENST00000404484 TRPC6Q9Y210 931 aa23.03■■□□□ 1.28
TPM1-208ENST00000404484 ESPNB1AK53 854 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 EVI5O60447 810 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 C6orf222P0C671 652 aaPredicted RBP23.02■■□□□ 1.28
TPM1-208ENST00000404484 EPB41P11171 864 aaKnown RBP23.02■■□□□ 1.28
TPM1-208ENST00000404484 PPP2R3AQ06190 1150 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 KCNA1Q09470 495 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 TBX2Q13207 712 aaPredicted RBP23.02■■□□□ 1.28
TPM1-208ENST00000404484 LRRC26Q2I0M4 334 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 VWA3BQ502W6 1294 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 FRMD5Q7Z6J6 570 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 TMEM161BQ8NDZ6 487 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 KCNN1Q92952 543 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 PHF24Q9UPV7 400 aa23.02■■□□□ 1.28
TPM1-208ENST00000404484 DYNC1LI2O43237 492 aaPredicted RBP23.01■■□□□ 1.27
TPM1-208ENST00000404484 ARL2P36404 184 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 ATN1P54259 1190 aaPredicted RBP23.01■■□□□ 1.27
TPM1-208ENST00000404484 KCNA10Q16322 511 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 DGKDQ16760 1214 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 ZNF484Q5JVG2 852 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 PPFIBP1Q86W92 1011 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 SLC9A9Q8IVB4 645 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 LRRC8AQ8IWT6 810 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 TMEM174Q8WUU8 243 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 TSEN34Q9BSV6 310 aaKnown RBP23.01■■□□□ 1.27
TPM1-208ENST00000404484 MKNK1Q9BUB5 465 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 SPC25Q9HBM1 224 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 AGPAT3Q9NRZ7 376 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 COL1A2P08123 1366 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 CST5P28325 142 aaPredicted RBP23.01■■□□□ 1.27
TPM1-208ENST00000404484 NAMPTP43490 491 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 NKX3-2P78367 333 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 GNASQ5JWF2 1037 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 IER5Q5VY09 327 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 TLK2Q86UE8 772 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 MAP4K3Q8IVH8 894 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 C12orf56Q8IXR9 622 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 NDST4Q9H3R1 872 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 Q9Y3F1 56 aa23.01■■□□□ 1.27
TPM1-208ENST00000404484 DENND3A2RUS2 1198 aa23■■□□□ 1.27
TPM1-208ENST00000404484 H0YGN5 161 aa23■■□□□ 1.27
TPM1-208ENST00000404484 MMP3P08254 477 aa23■■□□□ 1.27
TPM1-208ENST00000404484 MIIPQ5JXC2 388 aa23■■□□□ 1.27
TPM1-208ENST00000404484 PRPF38BQ5VTL8 546 aaKnown RBP23■■□□□ 1.27
TPM1-208ENST00000404484 TRIM59Q8IWR1 403 aa23■■□□□ 1.27
TPM1-208ENST00000404484 CACTINQ8WUQ7 758 aaKnown RBP23■■□□□ 1.27
TPM1-208ENST00000404484 BSNDQ8WZ55 320 aa23■■□□□ 1.27
TPM1-208ENST00000404484 IQCDQ96DY2 449 aa23■■□□□ 1.27
TPM1-208ENST00000404484 ARHGAP28Q9P2N2 729 aa23■■□□□ 1.27
TPM1-208ENST00000404484 ARMCX3Q9UH62 379 aaPredicted RBP23■■□□□ 1.27
TPM1-208ENST00000404484 TBX20Q9UMR3 447 aa23■■□□□ 1.27
TPM1-208ENST00000404484 FRMD4BQ9Y2L6 1034 aa23■■□□□ 1.27
TPM1-208ENST00000404484 PSMC2P35998 433 aaKnown RBP22.99■■□□□ 1.27
TPM1-208ENST00000404484 ACLYP53396 1101 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 BEX3Q00994 111 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 BRDTQ58F21 947 aaPredicted RBP22.99■■□□□ 1.27
TPM1-208ENST00000404484 SLC39A5Q6ZMH5 540 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 KSR1Q8IVT5 923 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 CCDC112Q8NEF3 446 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 TMEM143Q96AN5 459 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 AP5M1Q9H0R1 490 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 KCNF1Q9H3M0 494 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 DMAC2Q9NW81 257 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.99■■□□□ 1.27
TPM1-208ENST00000404484 NR2E3Q9Y5X4 410 aa22.99■■□□□ 1.27
TPM1-208ENST00000404484 IGKV6-21A0A0C4DH24 114 aa22.98■■□□□ 1.27
TPM1-208ENST00000404484 CLIC2O15247 247 aa22.98■■□□□ 1.27
TPM1-208ENST00000404484 MXD4Q14582 209 aaPredicted RBP22.98■■□□□ 1.27
TPM1-208ENST00000404484 CEP135Q66GS9 1140 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms