RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CNKSR3Q6P9H4 555 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 FOXD4L3Q6VB84 417 aaPredicted RBP10.27□□□□□ -0.77
VPS53-203ENST00000401468 MIER3Q7Z3K6 550 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 CATSPER3Q86XQ3 398 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 C4orf19Q8IY42 314 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 GLG1Q92896 1179 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 SPATA32Q96LK8 384 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 CLIC6Q96NY7 704 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 SLC9A7Q96T83 725 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 EIF2AK1Q9BQI3 630 aaKnown RBP10.27□□□□□ -0.77
VPS53-203ENST00000401468 CSRNP2Q9H175 543 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 TUFT1Q9NNX1 390 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 WRAP73Q9P2S5 460 aaPredicted RBP10.27□□□□□ -0.77
VPS53-203ENST00000401468 LRWD1Q9UFC0 647 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 TCEAL9Q9UHQ7 104 aa10.27□□□□□ -0.77
VPS53-203ENST00000401468 MED24O75448 989 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 CXCL10P02778 98 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 PFKMP08237 780 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 GHRP10912 638 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 XRCC6P12956 609 aaKnown RBP eCLIP10.26□□□□□ -0.778e-6■■□□□ 13.6
VPS53-203ENST00000401468 CMA1P23946 247 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 QARSP47897 775 aaKnown RBP10.26□□□□□ -0.77
VPS53-203ENST00000401468 PSMC5P62195 406 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 ADAM17P78536 824 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 ECM1Q16610 540 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 UGCGQ16739 394 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 TMEM119Q4V9L6 283 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 MSS51Q4VC12 460 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 HAUS3Q68CZ6 603 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 NCAPH2Q6IBW4 605 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 SHC4Q6S5L8 630 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 ERMNQ8TAM6 284 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 DNAJB3Q8WWF6 145 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 CEP89Q96ST8 783 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 C17orf80Q9BSJ5 609 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 SMARCAD1Q9H4L7 1026 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 ZNF302Q9NR11 478 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 ERAP1Q9NZ08 941 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 HPSEQ9Y251 543 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 KDM3AQ9Y4C1 1321 aa10.26□□□□□ -0.77
VPS53-203ENST00000401468 TRIP11Q15643 1979 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 LINC01553A4QN01 128 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 PP2D1A8MPX8 630 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 ZBTB42B2RXF5 422 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 CHMP2AO43633 222 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 MARCH6O60337 910 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 LPXNO60711 386 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 DKC1O60832 514 aaKnown RBP eCLIP10.25□□□□□ -0.773e-11■■■□□ 15.6
VPS53-203ENST00000401468 CHRNA1P02708 482 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 STAT5BP51692 787 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 PPFIA1Q13136 1202 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 IKBKEQ14164 716 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 GRIK4Q16099 956 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 FAM160B1Q5W0V3 765 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 SWSAP1Q6NVH7 229 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 USP49Q70CQ1 688 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 ATP8B4Q8TF62 1192 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 LRRC15Q8TF66 581 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 DYDC2Q96IM9 177 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 ZNF668Q96K58 619 aaPredicted RBP10.25□□□□□ -0.77
VPS53-203ENST00000401468 PNMA5Q96PV4 448 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 LXNQ9BS40 222 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 NIFKQ9BYG3 293 aaKnown RBP10.25□□□□□ -0.77
VPS53-203ENST00000401468 ZSWIM4Q9H7M6 989 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 GDPD2Q9HCC8 539 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 RGL1Q9NZL6 768 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 MTCH2Q9Y6C9 303 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 COL1A2P08123 1366 aa10.25□□□□□ -0.77
VPS53-203ENST00000401468 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 ZBTB24O43167 697 aaPredicted RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 BAIAP3O94812 1187 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 GJB5O95377 273 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 NCLP19338 710 aaKnown RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 CDC25AP30304 524 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 ME1P48163 572 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 PRKCEQ02156 737 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 RBL2Q08999 1139 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 PLCB4Q15147 1175 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 TARBP2Q15633 366 aaKnown RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 CSPP1Q1MSJ5 1256 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 XKR3Q5GH77 459 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 MARCH8Q5T0T0 291 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 KRT79Q5XKE5 535 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 BANK1Q8NDB2 785 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 SNX29Q8TEQ0 813 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 EPSTI1Q96J88 318 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 FAM167AQ96KS9 214 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 NT5C3AQ9H0P0 336 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 AZI2Q9H6S1 392 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 ANKEF1Q9NU02 776 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 THEGQ9P2T0 379 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 GABBR1Q9UBS5 961 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 TUBE1Q9UJT0 475 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 DBR1Q9UK59 544 aaKnown RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 ZNF215Q9UL58 517 aaPredicted RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 GINS2Q9Y248 185 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 PPME1Q9Y570 386 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 CDY2AQ9Y6F7 541 aa10.24□□□□□ -0.77
VPS53-203ENST00000401468 TDRD15B5MCY1 1934 aaKnown RBP10.24□□□□□ -0.77
VPS53-203ENST00000401468 MUC6Q6W4X9 2439 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms