RNA–Protein interactions for RNA: ENST00000358025.7

SYNE2-204, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SYNE2, Length 21,842 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-204ENST00000358025 ARID5AQ03989 594 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 FMR1Q06787 632 aaKnown RBP eCLIP4.39□□□□□ -1.71
SYNE2-204ENST00000358025 USH1GQ495M9 461 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 FKBP9P1Q75LS8 142 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 CHP1Q99653 195 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 AP3M1Q9Y2T2 418 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 COL3A1P02461 1466 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-204ENST00000358025 TGDSO95455 350 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 C1orf146Q5VVC0 180 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 TPTE2Q6XPS3 522 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 FOXP4Q8IVH2 680 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-204ENST00000358025 FCGR1AP12314 374 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 BRAFP15056 766 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 IL6STP40189 918 aaPredicted RBP4.39□□□□□ -1.71
SYNE2-204ENST00000358025 ATAD3BQ5T9A4 648 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 USP17L12C9JPN9 530 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 USP17L21D6R901 530 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 ZBTB22O15209 634 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 ZPR1O75312 459 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 GCNT3O95395 438 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 OCA2Q04671 838 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 RGS9BPQ6ZS82 235 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 TDRPQ86YL5 185 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 METTL13Q8N6R0 699 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 LRMDAQ9H2I8 198 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 ARHGEF3Q9NR81 526 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 PADI4Q9UM07 663 aa4.39□□□□□ -1.71
SYNE2-204ENST00000358025 PALM3A6NDB9 673 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 KCNQ3O43525 872 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 MAPRE2Q15555 327 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 NOA1Q8NC60 698 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 CAPN6Q9Y6Q1 641 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 MTSS1O43312 755 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 DCTN2Q13561 401 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 RAD9BQ6WBX8 426 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 RASSF3Q86WH2 238 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 POLE3Q9NRF9 147 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 STX8Q9UNK0 236 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 KCNJ14Q9UNX9 436 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TRAF3IP3Q9Y228 551 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 CLPTM1O96005 669 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PYGBP11216 843 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 NR1H2P55055 460 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 C2orf54Q08AI8 447 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TMC3Q7Z5M5 1100 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ACRBPQ8NEB7 543 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 NAF1Q96HR8 494 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 LRGUKQ96M69 825 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TLR10Q9BXR5 811 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ZFYVE16Q7Z3T8 1539 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 C16orf96A6NNT2 1141 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 RANBP17Q9H2T7 1088 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 KATNA1O75449 491 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 KCNA4P22459 653 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 MARSP56192 900 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 SESN3P58005 492 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 RSPH1Q8WYR4 309 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PICK1Q9NRD5 415 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 RSL24D1Q9UHA3 163 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PNMA3Q9UL41 463 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 CCDC166P0CW27 439 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 NR2F2P24468 414 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 KYAT3Q6YP21 454 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 U2AF1L4Q8WU68 220 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 IMPDH2P12268 514 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 UCHL3P15374 230 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 S100A1P23297 94 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 FBXO31Q5XUX0 539 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 OSBPL8Q9BZF1 889 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PARVGQ9HBI0 331 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PARVAQ9NVD7 372 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 POTECB2RU33 542 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 MED7O43513 233 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 SNX29Q8TEQ0 813 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ZNF496Q96IT1 587 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ST7Q9NRC1 585 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 H0Y626 953 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 XPO1O14980 1071 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TRIM16O95361 564 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 NAA30Q147X3 362 aaPredicted RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TMEM132AQ24JP5 1023 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ZNF394Q53GI3 561 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PNMA1Q8ND90 353 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TBCCD1Q9NVR7 557 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PCDHB2Q9Y5E7 798 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 EXOC1LA0A1B0GW35 172 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 DAPK3O43293 454 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PLA2G4BP0C869 781 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PPP4CP60510 307 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 HDLBPQ00341 1268 aaKnown RBP4.38□□□□□ -1.71
SYNE2-204ENST00000358025 GRIN1Q05586 938 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ACAP1Q15027 740 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ACMSDQ8TDX5 336 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 NSMCE4AQ9NXX6 385 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 ATP2C2O75185 946 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 PGM1P36871 562 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 HDAC4P56524 1084 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 TFDP2Q14188 446 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 METTL21CQ5VZV1 264 aa4.38□□□□□ -1.71
SYNE2-204ENST00000358025 WDR35Q9P2L0 1181 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms