RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 SYNCQ9H7C4 482 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 MAFBQ9Y5Q3 323 aaPredicted RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 A6NJR5 290 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 PEX10O60683 326 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 TSPY1Q01534 308 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 PURBQ96QR8 312 aaKnown RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 COL20A1Q9P218 1284 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 COASYQ13057 564 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 KLHL40Q2TBA0 621 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 NAALADL2Q58DX5 795 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 TAPT1Q6NXT6 567 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 CSGALNACT2Q8N6G5 542 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 NIFKQ9BYG3 293 aaKnown RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 ABHD14A-ACY1A0A1B0GW23 586 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 CD2BP2O95400 341 aaKnown RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 SFR1Q86XK3 245 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 PRPF31Q8WWY3 499 aaKnown RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 EXOC4Q96A65 974 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 C7orf25Q9BPX7 421 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 OGDHLQ9ULD0 1010 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.03□□□□□ -0.8
UPF2-202ENST00000357604 SQORQ9Y6N5 450 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 MORC2Q9Y6X9 1032 aaPredicted RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 UPP2O95045 317 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 PNPLA4P41247 253 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 TMEM62Q0P6H9 643 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 PLD1Q13393 1074 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 SKIV2LQ15477 1246 aaKnown RBP10.03□□□□□ -0.8
UPF2-202ENST00000357604 FIBCD1Q8N539 461 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 EMILIN2Q9BXX0 1053 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 TRIM5Q9C035 493 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 GJB4Q9NTQ9 266 aa10.03□□□□□ -0.8
UPF2-202ENST00000357604 ADCY6O43306 1168 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 NPTXRO95502 500 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 MCF2P10911 925 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 PPM1AP35813 382 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 NOLC1Q14978 699 aaKnown RBP eCLIP10.02□□□□□ -0.8
UPF2-202ENST00000357604 TRIM60Q495X7 471 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 VWA3BQ502W6 1294 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 TSHZ1Q6ZSZ6 1077 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 HAUS6Q7Z4H7 955 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 MTMR9Q96QG7 549 aa10.02□□□□□ -0.8
UPF2-202ENST00000357604 TADA2AO75478 443 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 MRPS9P82933 396 aaKnown RBP10.02□□□□□ -0.81
UPF2-202ENST00000357604 LRRC63Q05C16 580 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 SPIRE2Q8WWL2 714 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 TMEM134Q9H6X4 195 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 EHD2Q9NZN4 543 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 VTNP04004 478 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 CLTAP09496 248 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 ADAM9Q13443 819 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 PPP1R2P3Q6NXS1 205 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 FAM173BQ6P4H8 233 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 INTS8Q75QN2 995 aaKnown RBP10.02□□□□□ -0.81
UPF2-202ENST00000357604 NEK11Q8NG66 645 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 DDX27Q96GQ7 796 aaKnown RBP10.02□□□□□ -0.81
UPF2-202ENST00000357604 USP8P40818 1118 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 CLCN3P51790 818 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 MYL7Q01449 175 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 APPL2Q8NEU8 664 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 ETNPPLQ8TBG4 499 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 IFIH1Q9BYX4 1025 aaKnown RBP10.02□□□□□ -0.81
UPF2-202ENST00000357604 IL23AQ9NPF7 189 aa10.02□□□□□ -0.81
UPF2-202ENST00000357604 ATAD5Q96QE3 1844 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 TLL1O43897 1013 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 ITGB5P18084 799 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 MSNP26038 577 aaKnown RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 RDXP35241 583 aaKnown RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 TLE2Q04725 743 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 BFSP1Q12934 665 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 BTG3Q14201 252 aaPredicted RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 SV2CQ496J9 727 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 MPZL3Q6UWV2 235 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 CCDC60Q8IWA6 550 aaPredicted RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 ELOA2Q8IYF1 753 aaPredicted RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 FBXO22Q8NEZ5 403 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 EPSTI1Q96J88 318 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 TOX2Q96NM4 488 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 MMS19Q96T76 1030 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 SLC9A7Q96T83 725 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 SLC39A2Q9NP94 309 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 ENTPD7Q9NQZ7 604 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 TYW1Q9NV66 732 aaKnown RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 GDAQ9Y2T3 454 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 DAAM1Q9Y4D1 1078 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 TBKBP1A7MCY6 615 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 NDUFA8P51970 172 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 USP6NLQ92738 828 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 NOC4LQ9BVI4 516 aaKnown RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 DSEQ9UL01 958 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 FAM205CA6NFA0 338 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 LAG3P18627 525 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 PNOCQ13519 176 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 NFKBIBQ15653 356 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 SLC27A1Q6PCB7 646 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 AGO2Q9UKV8 859 aaKnown RBP10.01□□□□□ -0.81
UPF2-202ENST00000357604 ZMYM2Q9UBW7 1377 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 TMEM60Q9H2L4 133 aa10.01□□□□□ -0.81
UPF2-202ENST00000357604 MYH4Q9Y623 1939 aa10□□□□□ -0.81
UPF2-202ENST00000357604 SLC16A3O15427 465 aaKnown RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms