RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 CROTQ9UKG9 612 aa16.91■□□□□ 0.3
RTN3-205ENST00000356000 KDM3BQ7LBC6 1761 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 FLT4P35916 1363 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 WNT7AO00755 349 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 CAPN15O75808 1086 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 IL2RBP14784 551 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 PROSER3Q2NL68 480 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 PDXDC1Q6P996 788 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 MYOCDQ8IZQ8 938 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 CTNNBL1Q8WYA6 563 aaPredicted RBP16.9■□□□□ 0.3
RTN3-205ENST00000356000 DYDC2Q96IM9 177 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 BTBD7Q9P203 1132 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 TMEM120BA0PK00 339 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 FAM205CA6NFA0 338 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 PTPN4P29074 926 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 NEK3P51956 506 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 GEMIN4P57678 1058 aaKnown RBP16.9■□□□□ 0.3
RTN3-205ENST00000356000 KLRC3Q07444 240 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 KCTD19Q17RG1 926 aaPredicted RBP16.9■□□□□ 0.3
RTN3-205ENST00000356000 SOGA3Q5TF21 947 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 RFWD3Q6PCD5 774 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 VSTM1Q6UX27 236 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 NANOGNBQ7Z5D8 188 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 TRIM22Q8IYM9 498 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 LRRC37BQ96QE4 947 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 TGS1Q96RS0 853 aaKnown RBP16.9■□□□□ 0.3
RTN3-205ENST00000356000 LY9Q9HBG7 655 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 FAIMQ9NVQ4 179 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.9■□□□□ 0.3
RTN3-205ENST00000356000 UMODL1Q5DID0 1318 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 SPEF2Q9C093 1822 aa16.9■□□□□ 0.3
RTN3-205ENST00000356000 RASGRF2O14827 1237 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 PSMG1O95456 288 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 PYGMP11217 842 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 GALK1P51570 392 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 SPDYAQ5MJ70 313 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 GRAMD4Q6IC98 578 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 RASGEF1CQ8N431 466 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 NMD3Q96D46 503 aaKnown RBP16.89■□□□□ 0.29
RTN3-205ENST00000356000 DNAJC1Q96KC8 554 aaKnown RBP16.89■□□□□ 0.29
RTN3-205ENST00000356000 NEUROD6Q96NK8 337 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 DBR1Q9UK59 544 aaKnown RBP16.89■□□□□ 0.29
RTN3-205ENST00000356000 BOLA2-SMG1P6H3BVE0 249 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 MAGEB3O15480 346 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 IGKV5-2P06315 115 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 CDK4P11802 303 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 SLC15A2Q16348 729 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 ACSBG2Q5FVE4 666 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 C3orf62Q6ZUJ4 267 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 GPIHBP1Q8IV16 184 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 GIMAP8Q8ND71 665 aaPredicted RBP16.89■□□□□ 0.29
RTN3-205ENST00000356000 DQX1Q8TE96 717 aaKnown RBP16.89■□□□□ 0.29
RTN3-205ENST00000356000 TRIM51Q9BSJ1 452 aa16.89■□□□□ 0.29
RTN3-205ENST00000356000 KCNQ3O43525 872 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 DEXIO95424 95 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 SERPINB8P50452 374 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 TXNRD1Q16881 649 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 DUPD1Q68J44 220 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 THOC7Q6I9Y2 204 aaKnown RBP16.88■□□□□ 0.29
RTN3-205ENST00000356000 DSTYKQ6XUX3 929 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 DAAM2Q86T65 1068 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 CCDC65Q8IXS2 484 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 GAB3Q8WWW8 586 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 SNX27Q96L92 541 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 TIMMDC1Q9NPL8 285 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 ZNF711Q9Y462 761 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 NID2Q14112 1375 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 MYH4Q9Y623 1939 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 KANSL1LA0AUZ9 987 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 LSM1O15116 133 aaKnown RBP16.88■□□□□ 0.29
RTN3-205ENST00000356000 MAPK13O15264 365 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 PIM1P11309 404 aaPredicted RBP16.88■□□□□ 0.29
RTN3-205ENST00000356000 CCNE1P24864 410 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 SLCO1A2P46721 670 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 TDRD12Q587J7 1177 aaKnown RBP16.88■□□□□ 0.29
RTN3-205ENST00000356000 METTL13Q8N6R0 699 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 DGCR14Q96DF8 476 aaKnown RBP16.88■□□□□ 0.29
RTN3-205ENST00000356000 EEF2KMTQ96G04 330 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 MAGEB18Q96M61 343 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 EDEM3Q9BZQ6 932 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 TRIM31Q9BZY9 425 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 KIAA1522Q9P206 1035 aaPredicted RBP16.88■□□□□ 0.29
RTN3-205ENST00000356000 RPTORQ8N122 1335 aa16.88■□□□□ 0.29
RTN3-205ENST00000356000 NKRFO15226 690 aaKnown RBP eCLIP16.87■□□□□ 0.29
RTN3-205ENST00000356000 KRT38O76015 456 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 PDE1BQ01064 536 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 DCTN2Q13561 401 aaKnown RBP16.87■□□□□ 0.29
RTN3-205ENST00000356000 BCL2A1Q16548 175 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 ZNF362Q5T0B9 420 aaPredicted RBP16.87■□□□□ 0.29
RTN3-205ENST00000356000 CCDC174Q6PII3 467 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 C3orf67Q6ZVT6 689 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 POLR3CQ9BUI4 534 aaPredicted RBP16.87■□□□□ 0.29
RTN3-205ENST00000356000 SYNCQ9H7C4 482 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 MMRN2Q9H8L6 949 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 USP40Q9NVE5 1235 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 BICDL2A1A5D9 508 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 BTNL10A8MVZ5 291 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 DDX3XO00571 662 aaKnown RBP eCLIP16.87■□□□□ 0.296e-22■■■□□ 17.7
RTN3-205ENST00000356000 STRNO43815 780 aa16.87■□□□□ 0.29
RTN3-205ENST00000356000 KLRC4O43908 158 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms