RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 WTIPA6NIX2 430 aaPredicted RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 PFDN6O15212 129 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 EIF3DO15371 548 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP54-201ENST00000339859 CEP104O60308 925 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 TBC1D8O95759 1140 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 GNRH1P01148 92 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 RAG1P15918 1043 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 ARL4AP40617 200 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 ADKP55263 362 aaKnown RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 KCNB1Q14721 858 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 PPP1R21Q6ZMI0 780 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 TRIM58Q8NG06 486 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 C10orf71Q711Q0 1435 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 MYO1FO00160 1098 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 PDXKO00764 312 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 PLA2G6O60733 806 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 RALAP11233 206 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 TATDN1Q6P1N9 297 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 ERICH1Q86X53 443 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 GUF1Q8N442 669 aaKnown RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 SAAL1Q96ER3 474 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 C7orf25Q9BPX7 421 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 MAF1Q9H063 256 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 PQBP1O60828 265 aaKnown RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 GFPT2O94808 682 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 NPTXRO95502 500 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 NLRP11P59045 1033 aaKnown RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 FAM110CQ1W6H9 321 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 DPCR1Q3MIW9 517 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 CLMNQ96JQ2 1002 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 SEPT10Q9P0V9 454 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 H7C4K7 107 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 NFKBIAP25963 317 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 CDC25BP30305 580 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 PSEN2P49810 448 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 FAM117BQ6P1L5 589 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 REEP2Q9BRK0 252 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 SCINQ9Y6U3 715 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 NPHP3-ACAD11A0A0J9YXS1 232 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 A8MXQ7 604 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 STAMBPO95630 424 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 SERPING1P05155 500 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 ALDH7A1P49419 539 aaKnown RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 RFX6Q8HWS3 928 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 DCP1BQ8IZD4 617 aaKnown RBP10.94□□□□□ -0.66
USP54-201ENST00000339859 SLAIN1Q8ND83 568 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 SH3TC2Q8TF17 1288 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 UBN1Q9NPG3 1134 aa10.94□□□□□ -0.66
USP54-201ENST00000339859 CARNS1A5YM72 827 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CCDC85CA6NKD9 419 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 GOLGA8SH3BPF8 625 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 HMGCRP04035 888 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 ZNF286BP0CG31 522 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 LY6KQ17RY6 165 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 LONRF2Q1L5Z9 754 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 TOGARAM2Q6ZUX3 1019 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 NUDT18Q6ZVK8 323 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 RYBPQ8N488 228 aaPredicted RBP10.93□□□□□ -0.66
USP54-201ENST00000339859 DDX50Q9BQ39 737 aaKnown RBP10.93□□□□□ -0.66
USP54-201ENST00000339859 PKD1L3Q7Z443 1732 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 RAB27AP51159 221 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 VAV2P52735 878 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 GRIK4Q16099 956 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 PTGISQ16647 500 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 NOL9Q5SY16 702 aaKnown RBP10.93□□□□□ -0.66
USP54-201ENST00000339859 CCDC63Q8NA47 563 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 YME1L1Q96TA2 773 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 PDGFDQ9GZP0 370 aaPredicted RBP10.93□□□□□ -0.66
USP54-201ENST00000339859 WDR70Q9NW82 654 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 LAMB4A4D0S4 1761 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CACNA1FO60840 1977 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 GOLGA6L7A0A1B0GV03 622 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 GCLMP48507 274 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CYP27A1Q02318 531 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 MUM1L1Q5H9M0 696 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 TAOK1Q7L7X3 1001 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 HSPBP1Q9NZL4 362 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CFAP221Q4G0U5 840 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 SYT10Q6XYQ8 523 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 FRMD5Q7Z6J6 570 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CCDC25Q86WR0 208 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 MRFAP1L1Q96HT8 127 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 STRIP2Q9ULQ0 834 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 PRPSAP2O60256 369 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 ARP10275 920 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 PNPLA4P41247 253 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 OR1G1P47890 313 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 RNF219Q5W0B1 726 aaPredicted RBP10.93□□□□□ -0.66
USP54-201ENST00000339859 NFRKBQ6P4R8 1299 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CD302Q8IX05 232 aa10.93□□□□□ -0.66
USP54-201ENST00000339859 CALR3Q96L12 384 aaKnown RBP10.93□□□□□ -0.66
USP54-201ENST00000339859 BTBD19C9JJ37 291 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 NMT1P30419 496 aaKnown RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 NAMPTP43490 491 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 TREML2Q5T2D2 321 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 SRGAP1Q7Z6B7 1085 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 ASIC3Q9UHC3 531 aa10.92□□□□□ -0.66
USP54-201ENST00000339859 IPO11Q9UI26 975 aaKnown RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.92□□□□□ -0.66
USP54-201ENST00000339859 SPDYE16A6NNV3 312 aaPredicted RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms