RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 MAEAQ7L5Y9 396 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 C3orf20Q8ND61 904 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 B4GALNT2Q8NHY0 566 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 FAM210AQ96ND0 272 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 SH3BP1Q9Y3L3 701 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 POTEMA6NI47 508 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 PP2D1A8MPX8 630 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 ACTN4O43707 911 aaKnown RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 EIF4A3P38919 411 aaKnown RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 RPS6KA3P51812 740 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 PDE4DQ08499 809 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 CDKAL1Q5VV42 579 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 UHMK1Q8TAS1 419 aaKnown RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 TEKT4Q8WW24 435 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 P2RX7Q99572 595 aaKnown RBP11.77□□□□□ -0.53
LSM3-201ENST00000306024 SLC39A2Q9NP94 309 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 ZFATQ9P243 1243 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 GGA2Q9UJY4 613 aa11.77□□□□□ -0.53
LSM3-201ENST00000306024 LTBP1Q14766 1721 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 SPDYE5A6NIY4 337 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 CLSTN1O94985 981 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 KIF11P52732 1056 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 SESN3P58005 492 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 PPIL2Q13356 520 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 CUL3Q13618 768 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 TPH2Q8IWU9 490 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 MAGEC3Q8TD91 643 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 RANBP17Q9H2T7 1088 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 SLC38A10Q9HBR0 1119 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 ZNF112Q9UJU3 913 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 REXO2Q9Y3B8 237 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 CAPN6Q9Y6Q1 641 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 RGS16O15492 202 aaPredicted RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 RPN1P04843 607 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 GLI1P08151 1106 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 FERP16591 822 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 NOVP48745 357 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 GTF2A2P52657 109 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 DPP9Q86TI2 863 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 VSIG1Q86XK7 387 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 KIF2BQ8N4N8 673 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 LRRC27Q9C0I9 530 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 CNOT10Q9H9A5 744 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 KCNK9Q9NPC2 374 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 CAPN11Q9UMQ6 739 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 SRCAPQ6ZRS2 3230 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 DHX9Q08211 1270 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 RPS6KA1Q15418 735 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 CATSPERGQ6ZRH7 1159 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 INTS8Q75QN2 995 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 MDM1Q8TC05 714 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 NSUN6Q8TEA1 469 aaKnown RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 AGAP11Q8TF27 550 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 GJA10Q969M2 543 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 ITFG2Q969R8 447 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 AK8Q96MA6 479 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 GBP5Q96PP8 586 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 TEKT3Q9BXF9 490 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 ASCC2Q9H1I8 757 aaPredicted RBP11.76□□□□□ -0.53
LSM3-201ENST00000306024 RABGAP1Q9Y3P9 1069 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 AFG3L2Q9Y4W6 797 aa11.76□□□□□ -0.53
LSM3-201ENST00000306024 CETN3O15182 167 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 GTPBP6O43824 516 aaPredicted RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 CCND1P24385 295 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 EEF1GP26641 437 aaKnown RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 MAP3K10Q02779 954 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 DBN1Q16643 649 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 IFI16Q16666 785 aaKnown RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 QPCTQ16769 361 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 SEPT14Q6ZU15 432 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 MIER3Q7Z3K6 550 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 CREG2Q8IUH2 290 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 ZNF579Q8NAF0 562 aaKnown RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 ECT2Q9H8V3 914 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 ATP8A1Q9Y2Q0 1164 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 ADAMTSL1Q8N6G6 1762 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 UPP2O95045 317 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 SARSP49591 514 aaKnown RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 MDM2Q00987 491 aaPredicted RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 TREML2Q5T2D2 321 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 RASIP1Q5U651 963 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 DYMQ7RTS9 669 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 NLRC4Q9NPP4 1024 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 CHCHD3Q9NX63 227 aaKnown RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 PPP1R3GB7ZBB8 358 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 CCND2P30279 289 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 XRCC4Q13426 336 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 TAF1CQ15572 869 aaPredicted RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 CEP55Q53EZ4 464 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 NOL9Q5SY16 702 aaKnown RBP11.75□□□□□ -0.53
LSM3-201ENST00000306024 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.75□□□□□ -0.53
LSM3-201ENST00000306024 KDM4CQ9H3R0 1056 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 RNF14Q9UBS8 474 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 DNM3Q9UQ16 869 aa11.75□□□□□ -0.53
LSM3-201ENST00000306024 BICDL2A1A5D9 508 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 TBCAO75347 108 aaKnown RBP11.74□□□□□ -0.53
LSM3-201ENST00000306024 SUN1O94901 812 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 CUL4BQ13620 913 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 C11orf91Q3C1V1 193 aa11.74□□□□□ -0.53
LSM3-201ENST00000306024 ZNF658Q5TYW1 1059 aaPredicted RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms