RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 PARD6BQ9BYG5 372 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 NGRNQ9NPE2 291 aaKnown RBP9.26□□□□□ -0.93
NIPBL-201ENST00000282516 MTRF1O75570 445 aaKnown RBP9.26□□□□□ -0.93
NIPBL-201ENST00000282516 BRD2P25440 801 aaKnown RBP9.26□□□□□ -0.93
NIPBL-201ENST00000282516 TNFAIP2Q03169 654 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 RAD51Q06609 339 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.26□□□□□ -0.93
NIPBL-201ENST00000282516 IP6K1Q92551 441 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 WWP1Q9H0M0 922 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 MBD2Q9UBB5 411 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 TK2O00142 265 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 STXBP3O00186 592 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 BTDP43251 543 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 RNF26Q9BY78 433 aaPredicted RBP9.26□□□□□ -0.93
NIPBL-201ENST00000282516 DCTN4Q9UJW0 460 aa9.26□□□□□ -0.93
NIPBL-201ENST00000282516 APOA4P06727 396 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 HIC1Q14526 733 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 ZNF667Q5HYK9 610 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CDKL3Q8IVW4 592 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 TEX2Q8IWB9 1127 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CYP4F11Q9HBI6 524 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 JAK3P52333 1124 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 ARFIP2P53365 341 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CYTH1Q15438 398 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 ZNF699Q32M78 642 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 SLFNL1Q499Z3 407 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 C16orf89Q6UX73 402 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CCDC103Q8IW40 242 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 COG1Q8WTW3 980 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 DEPDC7Q96QD5 511 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 ETNK1Q9HBU6 452 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 H2AFY2Q9P0M6 372 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 NCALDP61601 193 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CYLC2Q14093 348 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 FBXO31Q5XUX0 539 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 FAM47EQ6ZV65 393 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 URGCPQ8TCY9 931 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 DCUN1D1Q96GG9 259 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 SLC52A2Q9HAB3 445 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 NDFIP2Q9NV92 336 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 DDX56Q9NY93 547 aaKnown RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 PCDHB8Q9UN66 801 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 BAZ2BQ9UIF8 2168 aaKnown RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 MYO1GB0I1T2 1018 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 PRKCQQ04759 706 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 LAMB3Q13751 1172 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 ARHGAP17Q68EM7 881 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 TSPYL6Q8N831 410 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 TERB1Q8NA31 727 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 NUP85Q9BW27 656 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 PRAMEP78395 509 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 SLC39A14Q15043 492 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 GRAMD1AQ96CP6 724 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 C19orf44Q9H6X5 657 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 FMNL1O95466 1100 aaPredicted RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 SYTL3Q4VX76 610 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 IFNL3Q8IZI9 196 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 FAM167AQ96KS9 214 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CCDC17Q96LX7 622 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CLK1P49759 484 aaKnown RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 MAGOHP61326 146 aaKnown RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CHMP1BQ7LBR1 199 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.25□□□□□ -0.932e-6■■■□□ 16.1
NIPBL-201ENST00000282516 FTOQ9C0B1 505 aaKnown RBP eCLIP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 NUMA1Q14980 2115 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 A0A1W2PP64 1363 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 GPS1Q13098 491 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 HEATR6Q6AI08 1181 aaKnown RBP9.25□□□□□ -0.93
NIPBL-201ENST00000282516 CLIC6Q96NY7 704 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 BFARQ9NZS9 450 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 ANAPC7Q9UJX3 599 aa9.25□□□□□ -0.93
NIPBL-201ENST00000282516 SNTNA6NMZ2 147 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 CHRNA3P32297 505 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 PSMC6P62333 389 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 SLC7A5Q01650 507 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 TLK2Q86UE8 772 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 FBXO18Q8NFZ0 1043 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 TOPORSQ9NS56 1045 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 LRRC53A6NM62 1247 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 MYO1CO00159 1063 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 PHKA2P46019 1235 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 RPS8P62241 208 aaKnown RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 AFG1LQ8WV93 481 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 TRIM13O60858 407 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 ZMYND8Q9ULU4 1186 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 ARL2BPQ9Y2Y0 163 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 LRRIQ3A6PVS8 624 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 DLGAP3O95886 979 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 TBXAS1P24557 533 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 SOX6P35712 828 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 PGM1P36871 562 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 GTF2H3Q13889 308 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 EFHC2Q5JST6 749 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 DAB2IPQ5VWQ8 1189 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 DSTYKQ6XUX3 929 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 MB21D1Q8N884 522 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 SUCLG2Q96I99 432 aa9.24□□□□□ -0.93
NIPBL-201ENST00000282516 DDX50Q9BQ39 737 aaKnown RBP9.24□□□□□ -0.93
NIPBL-201ENST00000282516 RPRD1BQ9NQG5 326 aaKnown RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms