RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 CTTNQ14247 550 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 CYTH1Q15438 398 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 RPAP3Q9H6T3 665 aaPredicted RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 NDE1Q9NXR1 346 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 CMA1P23946 247 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 EIF4A3P38919 411 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 THNSL1Q8IYQ7 743 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 ZNF341Q9BYN7 854 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 NOP53Q9NZM5 478 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 CDC23Q9UJX2 597 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 URB2Q14146 1524 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 UBE4BO95155 1302 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 FGGP02679 453 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 ANO5Q75V66 913 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 LUZP2Q86TE4 346 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 PCDHB8Q9UN66 801 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 CHGBP05060 677 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 GRIK1P39086 918 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 KIZQ2M2Z5 673 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 ADORA2BP29275 332 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 EIF3BP55884 814 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 VEPH1Q14D04 833 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 SEPT2Q15019 361 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 TOGARAM2Q6ZUX3 1019 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 PCDHA7Q9UN72 937 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 PNMA6EA0A0J9YXQ4 647 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 ANGPT2O15123 496 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 BMP3P12645 472 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 SOX11P35716 441 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 ZNF568Q3ZCX4 644 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 HEATR6Q6AI08 1181 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 BEST2Q8NFU1 509 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 COA7Q96BR5 231 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 FAM129AQ9BZQ8 928 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 COPRSQ9NQ92 184 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 EIF2AK2P19525 551 aaKnown RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 RANBP1P43487 201 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 GPC3P51654 580 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 E2F4Q16254 413 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 CNGA3Q16281 694 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 HORMAD1Q86X24 394 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 EFHBQ8N7U6 833 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 PRXQ9BXM0 1461 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 NUP62P37198 522 aaPredicted RBP12.07□□□□□ -0.48
PTPN4-201ENST00000263708 NAALADL2Q58DX5 795 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 TBC1D9BQ66K14 1250 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 KLHL24Q6TFL4 600 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 NDEL1Q9GZM8 345 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 NFU1Q9UMS0 254 aa12.07□□□□□ -0.48
PTPN4-201ENST00000263708 TARSL2A2RTX5 802 aaKnown RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ALDH1A1P00352 501 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 TADA1Q96BN2 335 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 SH3GL3Q99963 347 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 RC3H1Q5TC82 1133 aaKnown RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ZNF658Q5TYW1 1059 aaPredicted RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 AK8Q96MA6 479 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 USP19O94966 1318 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 SH3GL2Q99962 352 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 YIPF3Q9GZM5 350 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 UTP6Q9NYH9 597 aaKnown RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ADGRA2Q96PE1 1338 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 CAPN1P07384 714 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 PLA2G4BP0C869 781 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 SHROOM1Q2M3G4 852 aaPredicted RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 M0QYV0 167 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ST8SIA6P61647 398 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ALDH6A1Q02252 535 aaKnown RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 UBE2SQ16763 222 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 C17orf80Q9BSJ5 609 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 LGR6Q9HBX8 967 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 TOPORSQ9NS56 1045 aaPredicted RBP12.06□□□□□ -0.48
PTPN4-201ENST00000263708 PKD2L2Q9NZM6 624 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 SFI1A8K8P3 1242 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 CLDN3O15551 220 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 LCP1P13796 627 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 MDH1BQ5I0G3 518 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 GRAMD1CQ8IYS0 662 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 PPM1NQ8N819 430 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 FAM162AQ96A26 154 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 NEURL1BA8MQ27 555 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 PHKA2P46019 1235 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ZNF445P59923 1031 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 HSPBP1Q9NZL4 362 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 RALAP11233 206 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 ROR1Q01973 937 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 RHPN2Q8IUC4 686 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 CLEC4FQ8N1N0 589 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 MB21D1Q8N884 522 aa12.06□□□□□ -0.48
PTPN4-201ENST00000263708 KRT75O95678 551 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 MLNP12872 115 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 GUCA1AP43080 201 aaPredicted RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 TNFAIP2Q03169 654 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 GPS1Q13098 491 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 KRT78Q8N1N4 520 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 C2orf69Q8N8R5 385 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 SH3TC2Q8TF17 1288 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 DDX50Q9BQ39 737 aaKnown RBP12.05□□□□□ -0.48
PTPN4-201ENST00000263708 SESN1Q9Y6P5 492 aa12.05□□□□□ -0.48
PTPN4-201ENST00000263708 XDHP47989 1333 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms