RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 TMEM60Q9H2L4 133 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 BRMS1Q9HCU9 246 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 CHST12Q9NRB3 414 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 FAM105AQ9NUU6 356 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 SPG21Q9NZD8 308 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 CDH22Q9UJ99 828 aa24.74■■□□□ 1.55
VTI1B-201ENST00000216456 USP15Q9Y4E8 981 aaPredicted RBP24.74■■□□□ 1.55
VTI1B-201ENST00000216456 CSPP1Q1MSJ5 1256 aa24.73■■□□□ 1.55
VTI1B-201ENST00000216456 CCDC83Q8IWF9 413 aa24.73■■□□□ 1.55
VTI1B-201ENST00000216456 BCL7CQ8WUZ0 217 aaPredicted RBP24.73■■□□□ 1.55
VTI1B-201ENST00000216456 ZSWIM4Q9H7M6 989 aa24.73■■□□□ 1.55
VTI1B-201ENST00000216456 MUTYHQ9UIF7 546 aa24.73■■□□□ 1.55
VTI1B-201ENST00000216456 TRIOO75962 3097 aa24.73■■□□□ 1.55
VTI1B-201ENST00000216456 ZC3H11AO75152 810 aaKnown RBP eCLIP24.72■■□□□ 1.55
VTI1B-201ENST00000216456 BAG4O95429 457 aaKnown RBP24.72■■□□□ 1.55
VTI1B-201ENST00000216456 TXKP42681 527 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 CDC42EP1Q00587 391 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 COASYQ13057 564 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 SLFN12Q8IYM2 578 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 PSPC1Q8WXF1 523 aaKnown RBP24.72■■□□□ 1.55
VTI1B-201ENST00000216456 AUTS2Q8WXX7 1259 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 NAP1L4Q99733 375 aaKnown RBP24.72■■□□□ 1.55
VTI1B-201ENST00000216456 JPH2Q9BR39 696 aaPredicted RBP24.72■■□□□ 1.55
VTI1B-201ENST00000216456 TTC12Q9H892 705 aaPredicted RBP24.72■■□□□ 1.55
VTI1B-201ENST00000216456 AGPAT5Q9NUQ2 364 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 LZTS1Q9Y250 596 aa24.72■■□□□ 1.55
VTI1B-201ENST00000216456 POTEMA6NI47 508 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 DCXO43602 365 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 OFD1O75665 1012 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 HOXA11P31270 313 aaPredicted RBP24.71■■□□□ 1.55
VTI1B-201ENST00000216456 RFC5P40937 340 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 KCNC3Q14003 757 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 UBXN11Q5T124 520 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 TMC7Q7Z402 723 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 RNF149Q8NC42 400 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 HSD17B14Q9BPX1 270 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 TRAIPQ9BWF2 469 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 INO80BQ9C086 356 aaPredicted RBP24.71■■□□□ 1.55
VTI1B-201ENST00000216456 GBP3Q9H0R5 595 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 NRDE2Q9H7Z3 1164 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 TBC1D13Q9NVG8 400 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 DNAJB4Q9UDY4 337 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 PCDHA12Q9UN75 941 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 PCDHB2Q9Y5E7 798 aa24.71■■□□□ 1.55
VTI1B-201ENST00000216456 DKC1O60832 514 aaKnown RBP eCLIP24.7■■□□□ 1.54
VTI1B-201ENST00000216456 AGMOQ6ZNB7 445 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 FERMT3Q86UX7 667 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 ZNF280BQ86YH2 543 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 RNF135Q8IUD6 432 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 ASAP3Q8TDY4 903 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 PIGOQ8TEQ8 1089 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 MTMR9Q96QG7 549 aa24.7■■□□□ 1.54
VTI1B-201ENST00000216456 PUF60Q9UHX1 559 aaKnown RBP24.7■■□□□ 1.54
VTI1B-201ENST00000216456 NEMFO60524 1076 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 MCM7P33993 719 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 CA8P35219 290 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 PPM1AP35813 382 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 TECP42680 631 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 NOMO2Q5JPE7 1267 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 SYCE2Q6PIF2 218 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 OTUD6AQ7L8S5 288 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 FEZF2Q8TBJ5 459 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 KIF2CQ99661 725 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 MTRQ99707 1265 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 ARID2Q68CP9 1835 aa24.69■■□□□ 1.54
VTI1B-201ENST00000216456 KRT17Q04695 432 aa24.68■■□□□ 1.54
VTI1B-201ENST00000216456 TRIM29Q14134 588 aa24.68■■□□□ 1.54
VTI1B-201ENST00000216456 CPB2Q96IY4 423 aa24.68■■□□□ 1.54
VTI1B-201ENST00000216456 VN1R3Q9BXE9 311 aa24.68■■□□□ 1.54
VTI1B-201ENST00000216456 EIF2AQ9BY44 585 aaKnown RBP24.68■■□□□ 1.54
VTI1B-201ENST00000216456 MRPL9Q9BYD2 267 aaKnown RBP24.68■■□□□ 1.54
VTI1B-201ENST00000216456 S1PR5Q9H228 398 aa24.68■■□□□ 1.54
VTI1B-201ENST00000216456 C2orf71A6NGG8 1288 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 ZNF623O75123 536 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 DDHD2O94830 711 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 ALADP13716 330 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 SP100P23497 879 aaPredicted RBP24.67■■□□□ 1.54
VTI1B-201ENST00000216456 SLC11A1P49279 550 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 ALDH7A1P49419 539 aaKnown RBP24.67■■□□□ 1.54
VTI1B-201ENST00000216456 PDE12Q6L8Q7 609 aaKnown RBP24.67■■□□□ 1.54
VTI1B-201ENST00000216456 ANKRD54Q6NXT1 300 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 KANK3Q6NY19 840 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 GLB1LQ6UWU2 654 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 SRGAP1Q7Z6B7 1085 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 RPGRIP1Q96KN7 1286 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 CDCA3Q99618 268 aaPredicted RBP24.67■■□□□ 1.54
VTI1B-201ENST00000216456 RNF39Q9H2S5 420 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 NGRNQ9NPE2 291 aaKnown RBP24.67■■□□□ 1.54
VTI1B-201ENST00000216456 LIMCH1Q9UPQ0 1083 aa24.67■■□□□ 1.54
VTI1B-201ENST00000216456 GALTP07902 379 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 CAPSQ13938 189 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 MAEAQ7L5Y9 396 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 VPS52Q8N1B4 723 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 MRPL43Q8N983 215 aaKnown RBP24.66■■□□□ 1.54
VTI1B-201ENST00000216456 SMG8Q8ND04 991 aaKnown RBP24.66■■□□□ 1.54
VTI1B-201ENST00000216456 SUSD6Q92537 303 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 GPRC5CQ9NQ84 441 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 HES2Q9Y543 173 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 PPME1Q9Y570 386 aa24.66■■□□□ 1.54
VTI1B-201ENST00000216456 TSPAN1O60635 241 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms