RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 AKAP5P24588 427 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CDC27P30260 824 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 USP14P54578 494 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TTC38Q5R3I4 469 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MFSD4BQ5TF39 518 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 FAM47EQ6ZV65 393 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MYOCDQ8IZQ8 938 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 UBE2OQ9C0C9 1292 aaKnown RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 EPC1Q9H2F5 836 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TUBB1Q9H4B7 451 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 EPS8L2Q9H6S3 715 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 SF3B1O75533 1304 aaKnown RBP eCLIP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 H3BMM5 538 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 SCGNO76038 276 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 KCNJ6P48051 423 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 GUCY2FP51841 1108 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 EIF3BP55884 814 aaKnown RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 ZNF174Q15697 407 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 GPBP1Q86WP2 473 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TTC39CQ8N584 583 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 VPS33AQ96AX1 596 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 BTBD6Q96KE9 485 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 GOLPH3LQ9H4A5 285 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PCDHA5Q9Y5H7 936 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 RALGAPBQ86X10 1494 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CCT5P48643 541 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 ALCAMQ13740 583 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PMF1Q6P1K2 205 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TMEM154Q6P9G4 183 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MTERF3Q96E29 417 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 AP1S3Q96PC3 154 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 ATP8A2Q9NTI2 1148 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TBC1D7Q9P0N9 293 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 ARL2BPQ9Y2Y0 163 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CFAP73A6NFT4 308 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 GNPATO15228 680 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CLASP2O75122 1294 aaKnown RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CES1P23141 567 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TDRPQ86YL5 185 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 BBS2Q9BXC9 721 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 SPRTNQ9H040 489 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PRDM5Q9NQX1 630 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TBC1D23Q9NUY8 699 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CCND2P30279 289 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MAPK4P31152 587 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CNGA3Q16281 694 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PREPLQ4J6C6 727 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 QKIQ96PU8 341 aaKnown RBP eCLIP6.38□□□□□ -1.391e-6■■■■□ 23.5
SCN1A-212ENST00000636194 TMEM60Q9H2L4 133 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 RPF1Q9H9Y2 349 aaKnown RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 GDPD2Q9HCC8 539 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 HERC5Q9UII4 1024 aaKnown RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 KCNH4Q9UQ05 1017 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CFAP69A5D8W1 941 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 TRIM64A6NGJ6 449 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 LRRC14BA6NHZ5 514 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MYL7Q01449 175 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PIK3AP1Q6ZUJ8 805 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 AFG1LQ8WV93 481 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 LRRC59Q96AG4 307 aaKnown RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 NT5C1BQ96P26 610 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 APOL6Q9BWW8 343 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PHACTR1Q9C0D0 580 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MIS18AQ9NYP9 233 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 SLC25A13Q9UJS0 675 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PCDHA12Q9UN75 941 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 SH3GLB1Q9Y371 365 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 PPP2R3BQ9Y5P8 575 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 MORC2Q9Y6X9 1032 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-212ENST00000636194 DNAJC13O75165 2243 aa6.38□□□□□ -1.39
SCN1A-212ENST00000636194 CYTH3O43739 400 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ADRA2BP18089 450 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ITPRIPL1Q6GPH6 555 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 STAMQ92783 540 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 SKA1Q96BD8 255 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 VPS35Q96QK1 796 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 CALN1Q9BXU9 219 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 SP110Q9HB58 689 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 HDAC6Q9UBN7 1215 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TOP2AP11388 1531 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 WIZO95785 1651 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 RGS2P41220 211 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 IST1P53990 364 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ZYXQ15942 572 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 Q3C1V9 767 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 OSBPL9Q96SU4 736 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 INO80BQ9C086 356 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 MRPL39Q9NYK5 338 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 RBM8AQ9Y5S9 174 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 CHP2O43745 196 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PDX1P52945 283 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TBC1D1Q86TI0 1168 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 SLC4A9Q96Q91 983 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 TOPORSQ9NS56 1045 aaPredicted RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 PANK4Q9NVE7 773 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 ADAM21Q9UKJ8 722 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 GTF2A1LQ9UNN4 478 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 RPSAP08865 295 aaKnown RBP6.37□□□□□ -1.39
SCN1A-212ENST00000636194 UQCRBP14927 111 aa6.37□□□□□ -1.39
SCN1A-212ENST00000636194 GAP43P17677 238 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms