RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 IBSPP21815 317 aaPredicted RBP20.17■□□□□ 0.82
CLN3-243ENST00000635973 KCNA5P22460 613 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 CDC25AP30304 524 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 LONP1P36776 959 aaKnown RBP20.17■□□□□ 0.82
CLN3-243ENST00000635973 NASPP49321 788 aaPredicted RBP20.17■□□□□ 0.82
CLN3-243ENST00000635973 CLCN3P51790 818 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 NUCB2P80303 420 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 TARBP2Q15633 366 aaKnown RBP20.17■□□□□ 0.82
CLN3-243ENST00000635973 EFCAB12Q6NXP0 572 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 NPAS4Q8IUM7 802 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 RASSF8Q8NHQ8 419 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 SLC7A3Q8WY07 619 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 NACC1Q96RE7 527 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 BMP2KQ9NSY1 1161 aaPredicted RBP20.17■□□□□ 0.82
CLN3-243ENST00000635973 ANKEF1Q9NU02 776 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 RNF216Q9NWF9 866 aaPredicted RBP20.17■□□□□ 0.82
CLN3-243ENST00000635973 RAPGEFL1Q9UHV5 662 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 CFAP45Q9UL16 551 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 AKT3Q9Y243 479 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 KDM3AQ9Y4C1 1321 aa20.17■□□□□ 0.82
CLN3-243ENST00000635973 ZBTB39O15060 712 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 RPS6KA5O75582 802 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 DGKIO75912 1065 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 YEATS4O95619 227 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 MUTP22033 750 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 BMPR1AP36894 532 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 UBA7P41226 1012 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 DNM2P50570 870 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 DNM1Q05193 864 aaKnown RBP20.16■□□□□ 0.82
CLN3-243ENST00000635973 SLC39A14Q15043 492 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 ATL3Q6DD88 541 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 FAM43BQ6ZT52 329 aaPredicted RBP20.16■□□□□ 0.82
CLN3-243ENST00000635973 EXOC8Q8IYI6 725 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 NSUN3Q9H649 340 aaKnown RBP20.16■□□□□ 0.82
CLN3-243ENST00000635973 DDX19AQ9NUU7 478 aaKnown RBP20.16■□□□□ 0.82
CLN3-243ENST00000635973 KIAA1024Q9UPX6 916 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 ZDHHC9Q9Y397 364 aa20.16■□□□□ 0.82
CLN3-243ENST00000635973 A0A087WWV3 80 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 DENND3A2RUS2 1198 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 SPTLC2O15270 562 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 MAFO75444 373 aaPredicted RBP20.15■□□□□ 0.82
CLN3-243ENST00000635973 RFC5P40937 340 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 GRIN1Q05586 938 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 CABP7Q86V35 215 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 KIAA0319LQ8IZA0 1049 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 KRI1Q8N9T8 703 aaKnown RBP20.15■□□□□ 0.82
CLN3-243ENST00000635973 ZNF579Q8NAF0 562 aaKnown RBP20.15■□□□□ 0.82
CLN3-243ENST00000635973 LINC00301Q8NCQ3 95 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 ZNF689Q96CS4 500 aaPredicted RBP20.15■□□□□ 0.82
CLN3-243ENST00000635973 PPP1R16BQ96T49 567 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 LMAN2LQ9H0V9 348 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 FBXO2Q9UK22 296 aaPredicted RBP20.15■□□□□ 0.82
CLN3-243ENST00000635973 PCDHB7Q9Y5E2 793 aa20.15■□□□□ 0.82
CLN3-243ENST00000635973 SRPRBQ9Y5M8 271 aaKnown RBP20.15■□□□□ 0.82
CLN3-243ENST00000635973 NCOR1O75376 2440 aa20.14■□□□□ 0.82
CLN3-243ENST00000635973 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.14■□□□□ 0.81
CLN3-243ENST00000635973 ARHGEF35A5YM69 484 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 C5orf67F2Z3F1 127 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 GPR182O15218 404 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 VTNP04004 478 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 TXLNAP40222 546 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 RARRES1P49788 294 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 EMC2Q15006 297 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 PAN2Q504Q3 1202 aaKnown RBP20.14■□□□□ 0.81
CLN3-243ENST00000635973 TCEAL5Q5H9L2 206 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 RTN4RL1Q86UN2 441 aaPredicted RBP20.14■□□□□ 0.81
CLN3-243ENST00000635973 CMTR2Q8IYT2 770 aaKnown RBP20.14■□□□□ 0.81
CLN3-243ENST00000635973 LINC01599Q8WXQ3 324 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 CALML4Q96GE6 196 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 SCLT1Q96NL6 688 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 PLVAPQ9BX97 442 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 NT5C3AQ9H0P0 336 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 CSRNP2Q9H175 543 aa20.14■□□□□ 0.81
CLN3-243ENST00000635973 USO1O60763 962 aaKnown RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 XRCC6P12956 609 aaKnown RBP eCLIP20.13■□□□□ 0.81
CLN3-243ENST00000635973 KRT85P78386 507 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 ECM1Q16610 540 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 LEXMQ3ZCV2 418 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 SPECC1Q5M775 1068 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 KCNG4Q8TDN1 519 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 CLP1Q92989 425 aaKnown RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 CLIC6Q96NY7 704 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 CEP89Q96ST8 783 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 PLIN2Q99541 437 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 MTRQ99707 1265 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 MMTAG2Q9BU76 263 aaKnown RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 RC3H2Q9HBD1 1191 aaKnown RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 ATP6V0A4Q9HBG4 840 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 DBR1Q9UK59 544 aaKnown RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 DNM3Q9UQ16 869 aa20.13■□□□□ 0.81
CLN3-243ENST00000635973 NOC2LQ9Y3T9 749 aaKnown RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 MORC2Q9Y6X9 1032 aaPredicted RBP20.13■□□□□ 0.81
CLN3-243ENST00000635973 ARID2Q68CP9 1835 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 KIAA1671Q9BY89 1806 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 BRWD1Q9NSI6 2320 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 SLC26A4O43511 780 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 NCK2O43639 380 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 GAS2O43903 313 aaKnown RBP20.12■□□□□ 0.81
CLN3-243ENST00000635973 PPP6R2O75170 966 aa20.12■□□□□ 0.81
CLN3-243ENST00000635973 DGAT1O75907 488 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms