RNA–Protein interactions for RNA: ENST00000634712.2

LINC00339-207, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-207ENST00000634712 PAN2Q504Q3 1202 aaKnown RBP17.46■□□□□ 0.39
LINC00339-207ENST00000634712 POTEGQ6S5H5 508 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 SRGAP1Q7Z6B7 1085 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 FERMT3Q86UX7 667 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 HSCBQ8IWL3 235 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 CMTR2Q8IYT2 770 aaKnown RBP17.46■□□□□ 0.39
LINC00339-207ENST00000634712 RNF149Q8NC42 400 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 SNX29Q8TEQ0 813 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 ELAC1Q9H777 363 aaKnown RBP17.46■□□□□ 0.39
LINC00339-207ENST00000634712 TMEM161AQ9NX61 479 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 MTCH2Q9Y6C9 303 aa17.46■□□□□ 0.39
LINC00339-207ENST00000634712 USO1O60763 962 aaKnown RBP17.45■□□□□ 0.38
LINC00339-207ENST00000634712 POU3F3P20264 500 aaPredicted RBP17.45■□□□□ 0.38
LINC00339-207ENST00000634712 PHKA2P46019 1235 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 FAM189BP81408 668 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 SPOUT1Q5T280 376 aaKnown RBP17.45■□□□□ 0.38
LINC00339-207ENST00000634712 CRIPAKQ8N1N5 446 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 IGSF22Q8N9C0 903 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 SNX21Q969T3 373 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 XPNPEP1Q9NQW7 623 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 LMCD1Q9NZU5 365 aa17.45■□□□□ 0.38
LINC00339-207ENST00000634712 PIN4Q9Y237 131 aaKnown RBP17.45■□□□□ 0.38
LINC00339-207ENST00000634712 TBKBP1A7MCY6 615 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 HOXA2O43364 376 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 RB1P06400 928 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 HSP90AA1P07900 732 aaKnown RBP17.44■□□□□ 0.38
LINC00339-207ENST00000634712 BMPR1AP36894 532 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 ATP2C1P98194 919 aaPredicted RBP17.44■□□□□ 0.38
LINC00339-207ENST00000634712 NCBP1Q09161 790 aaKnown RBP17.44■□□□□ 0.38
LINC00339-207ENST00000634712 GPM6BQ13491 265 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 SKIV2LQ15477 1246 aaKnown RBP17.44■□□□□ 0.38
LINC00339-207ENST00000634712 PTPROQ16827 1216 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 TWF2Q6IBS0 349 aaKnown RBP17.44■□□□□ 0.38
LINC00339-207ENST00000634712 MAEAQ7L5Y9 396 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 ABI1Q8IZP0 508 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 RNF169Q8NCN4 708 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 MCPH1Q8NEM0 835 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 RC3H2Q9HBD1 1191 aaKnown RBP17.44■□□□□ 0.38
LINC00339-207ENST00000634712 IFT122Q9HBG6 1241 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 KIAA1024Q9UPX6 916 aa17.44■□□□□ 0.38
LINC00339-207ENST00000634712 A0A0U1RQF3 1178 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 H3BNC9 293 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 LPXNO60711 386 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 BMP15O95972 392 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 SKIP12755 728 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 SYT1P21579 422 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 GATMP50440 423 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 ZRSR1Q15695 479 aaKnown RBP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 FAM102BQ5T8I3 360 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 ARL6IP4Q66PJ3 421 aaKnown RBP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 PADI6Q6TGC4 694 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 ECHDC2Q86YB7 292 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 CLP1Q92989 425 aaKnown RBP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 C11orf84Q9BUA3 381 aaPredicted RBP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 POLR3FQ9H1D9 316 aaPredicted RBP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 DDX19AQ9NUU7 478 aaKnown RBP17.43■□□□□ 0.38
LINC00339-207ENST00000634712 DNM3Q9UQ16 869 aa17.43■□□□□ 0.38
LINC00339-207ENST00000634712 VWA3AA6NCI4 1184 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 ERLIN2O94905 339 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 EOMESO95936 686 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 ARL2P36404 184 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 IL17AQ16552 155 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 AAASQ9NRG9 546 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 MRPL42Q9Y6G3 142 aaKnown RBP17.42■□□□□ 0.38
LINC00339-207ENST00000634712 ARID2Q68CP9 1835 aa17.42■□□□□ 0.38
LINC00339-207ENST00000634712 PP2D1A8MPX8 630 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 INO80B-WBP1J3KQ70 363 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 FGFR1P11362 822 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 CDC25AP30304 524 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 PTENP60484 403 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 POU5F1BQ06416 359 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 PCBP1Q15365 356 aaKnown RBP eCLIP17.41■□□□□ 0.38
LINC00339-207ENST00000634712 ECM1Q16610 540 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 ASAP3Q8TDY4 903 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 CDK5RAP3Q96JB5 506 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 PLVAPQ9BX97 442 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 TMEM117Q9H0C3 514 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 BHMT2Q9H2M3 363 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 COL4A6Q14031 1691 aa17.41■□□□□ 0.38
LINC00339-207ENST00000634712 PRRC2BQ5JSZ5 2229 aaKnown RBP17.41■□□□□ 0.38
LINC00339-207ENST00000634712 C5orf67F2Z3F1 127 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 CYP11B2P19099 503 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 GLRA2P23416 452 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 RAB27AP51159 221 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 CAPSQ13938 189 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 MRPL38Q96DV4 380 aaKnown RBP17.4■□□□□ 0.38
LINC00339-207ENST00000634712 MINDY3Q9H8M7 445 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 GPRC5CQ9NQ84 441 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 AGPAT5Q9NUQ2 364 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 PCDHB12Q9Y5F1 795 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 EYSQ5T1H1 3165 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 TRANK1O15050 2925 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 LRRIQ4A6NIV6 560 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 AXLP30530 894 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 SF3A1Q15459 793 aaKnown RBP17.4■□□□□ 0.38
LINC00339-207ENST00000634712 NAALADL2Q58DX5 795 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 ZBTB8OSQ8IWT0 167 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 PGBD4Q96DM1 585 aa17.4■□□□□ 0.38
LINC00339-207ENST00000634712 TRAIPQ9BWF2 469 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms