RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 KIAA1671Q9BY89 1806 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 PRR33A8MZF0 331 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 TBX3O15119 743 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 DCXO43602 365 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 CCNT1O60563 726 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 P4HBP07237 508 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 FDPSP14324 419 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 GCFC2P16383 781 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 ATF7P17544 494 aaPredicted RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 QARSP47897 775 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 AK2P54819 239 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 ANAPC15P60006 121 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 RBM10P98175 930 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 KRT17Q04695 432 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 DUSP6Q16828 381 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 EARS2Q5JPH6 523 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 KCNT2Q6UVM3 1135 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 PIK3AP1Q6ZUJ8 805 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 ZNF410Q86VK4 478 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 RHPN2Q8IUC4 686 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 KSR1Q8IVT5 923 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 ABI1Q8IZP0 508 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 ZNF579Q8NAF0 562 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 RNF169Q8NCN4 708 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 SMRP1Q8NCR6 262 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 ZNF558Q96NG5 402 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 POP1Q99575 1024 aaKnown RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 CDCA3Q99618 268 aaPredicted RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 TRAIPQ9BWF2 469 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 INO80BQ9C086 356 aaPredicted RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 CYP26B1Q9NR63 512 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 PPP4R2Q9NY27 417 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 DACT1Q9NYF0 836 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 SPG21Q9NZD8 308 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 WRAP73Q9P2S5 460 aaPredicted RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 ORC3Q9UBD5 711 aaPredicted RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 VAV3Q9UKW4 847 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 BARX2Q9UMQ3 279 aaPredicted RBP8.55□□□□□ -1.04
CUX1-219ENST00000606749 PLXNA4Q9HCM2 1894 aa8.55□□□□□ -1.04
CUX1-219ENST00000606749 STK36Q9NRP7 1315 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 DKC1O60832 514 aaKnown RBP eCLIP8.54□□□□□ -1.044e-8■■■■□ 20.4
CUX1-219ENST00000606749 PLA2G5P39877 138 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 PBX3P40426 434 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 PHKA2P46019 1235 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 NPEPPSP55786 919 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 KCNC3Q14003 757 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 ANKRD1Q15327 319 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 EPHA7Q15375 998 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 ME3Q16798 604 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 PLA2G4FQ68DD2 849 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 TMEM184AQ6ZMB5 413 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 RNF135Q8IUD6 432 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 C4orf19Q8IY42 314 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 EXOC8Q8IYI6 725 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 LRRC43Q8N309 656 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 NECAB1Q8N987 351 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 VN1R2Q8NFZ6 395 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 HELQQ8TDG4 1101 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 WASF1Q92558 559 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 FAM122AQ96E09 287 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 CEP170P1Q96L14 293 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 NAP1L4Q99733 375 aaKnown RBP8.54□□□□□ -1.04
CUX1-219ENST00000606749 TCF25Q9BQ70 676 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 JPH2Q9BR39 696 aaPredicted RBP8.54□□□□□ -1.04
CUX1-219ENST00000606749 IFT122Q9HBG6 1241 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 NGRNQ9NPE2 291 aaKnown RBP8.54□□□□□ -1.04
CUX1-219ENST00000606749 RGL1Q9NZL6 768 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 HCN4Q9Y3Q4 1203 aa8.54□□□□□ -1.04
CUX1-219ENST00000606749 USP15Q9Y4E8 981 aaPredicted RBP8.54□□□□□ -1.04
CUX1-219ENST00000606749 FSD2A1L4K1 749 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 FAM205CA6NFA0 338 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 HIDE1A8MVS5 230 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 LOC730098B7Z3J9 87 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 ZBTB39O15060 712 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 MARCH6O60337 910 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 ZNF623O75123 536 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 OFD1O75665 1012 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 BAG4O95429 457 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 SRGAP2CP0DJJ0 459 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 SKIP12755 728 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 SFPQP23246 707 aaKnown RBP eCLIP8.53□□□□□ -1.041e-6■□□□□ 10
CUX1-219ENST00000606749 PPM1AP35813 382 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 ALDH7A1P49419 539 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 BCAR1P56945 870 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 SPIRE1Q08AE8 756 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 NR5A1Q13285 461 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 LONRF3Q496Y0 759 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 HERC4Q5GLZ8 1057 aaPredicted RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 PLPP4Q5VZY2 271 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 TWF2Q6IBS0 349 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 OTUD6AQ7L8S5 288 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 TMC7Q7Z402 723 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 SLFN12Q8IYM2 578 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 SLC39A11Q8N1S5 342 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 MRPL43Q8N983 215 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 PRPF31Q8WWY3 499 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 SLC7A3Q8WY07 619 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 SUSD6Q92537 303 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 TNFRSF25Q93038 417 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 LPPQ93052 612 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms