RNA–Protein interactions for RNA: ENST00000599138.5

VRK3-215, Transcript of vaccinia related kinase 3, human

TSL 4

Gene VRK3, Length 503 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-215	ENST00000599138		H3BNC9	293 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	GTPBP6	O43824	516 aa	Predicted RBP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	CSDE1	O75534	798 aa	Known RBP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	RB1	P06400	928 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	FGFR4	P22455	802 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	SFPQ	P23246	707 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	ARL2	P36404	184 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	BMPR1A	P36894	532 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	ATP2C1	P98194	919 aa	Predicted RBP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	POU5F1B	Q06416	359 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	BTG3	Q14201	252 aa	Predicted RBP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	ECM1	Q16610	540 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	SRGAP1	Q7Z6B7	1085 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	ZNF598	Q86UK7	904 aa	Known RBP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	PIGO	Q8TEQ8	1089 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	SNX21	Q969T3	373 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	SCLT1	Q96NL6	688 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	NACC1	Q96RE7	527 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	ATP6V0A4	Q9HBG4	840 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	RNF19A	Q9NV58	838 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	TMEM161A	Q9NX61	479 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	RWDD3	Q9Y3V2	267 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	PCDHB7	Q9Y5E2	793 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138	KIAA1671	Q9BY89	1806 aa		10.81	□□□□□ -0.68
VRK3-215	ENST00000599138		A0A0U1RQF3	1178 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138		K7ELQ4	463 aa	Predicted RBP	10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	ZSCAN20	P17040	1043 aa	Predicted RBP	10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	PDC	P20941	246 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	GATM	P50440	423 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	PTEN	P60484	403 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	MXD4	Q14582	209 aa	Predicted RBP	10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	FAM102B	Q5T8I3	360 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	HAUS3	Q68CZ6	603 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	POTEG	Q6S5H5	508 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	ECHDC2	Q86YB7	292 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	ASAP3	Q8TDY4	903 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	NLRP4	Q96MN2	994 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	PLVAP	Q9BX97	442 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	MINDY3	Q9H8M7	445 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	DACT1	Q9NYF0	836 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	LRWD1	Q9UFC0	647 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	LRFN2	Q9ULH4	789 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	STK24	Q9Y6E0	443 aa		10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	MRPL42	Q9Y6G3	142 aa	Known RBP	10.8	□□□□□ -0.68
VRK3-215	ENST00000599138	ZNF623	O75123	536 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	EOMES	O95936	686 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	SRGAP2C	P0DJJ0	459 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	ATF7	P17544	494 aa	Predicted RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	GLRA2	P23416	452 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	HOXA11	P31270	313 aa	Predicted RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	CCT6A	P40227	531 aa	Known RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	GPM6B	Q13491	265 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	CCDC85B	Q15834	202 aa	Predicted RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	ARL6IP4	Q66PJ3	421 aa	Known RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	DTHD1	Q6ZMT9	781 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	BRAP	Q7Z569	592 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	RNF149	Q8NC42	400 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	MRPL38	Q96DV4	380 aa	Known RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	MMTAG2	Q9BU76	263 aa	Known RBP	10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	NFKBIZ	Q9BYH8	718 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	RAB34	Q9BZG1	259 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	PRDM6	Q9NQX0	595 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	AGPAT5	Q9NUQ2	364 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	ATG2A	Q2TAZ0	1938 aa		10.79	□□□□□ -0.68
VRK3-215	ENST00000599138	TBKBP1	A7MCY6	615 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	PP2D1	A8MPX8	630 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	HOXA2	O43364	376 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	USO1	O60763	962 aa	Known RBP	10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	FGFR1	P11362	822 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CYP11B2	P19099	503 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	SYT1	P21579	422 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CTNNB1	P35222	781 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	PHKA2	P46019	1235 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CAPS	Q13938	189 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	PAN2	Q504Q3	1202 aa	Known RBP	10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	NAALADL2	Q58DX5	795 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CLLU1OS	Q5K130	101 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	HYI	Q5T013	277 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	PADI6	Q6TGC4	694 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CATSPER4	Q7RTX7	472 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	MCPH1	Q8NEM0	835 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	SNX29	Q8TEQ0	813 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	PPM1E	Q8WY54	764 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	P2RX5	Q93086	422 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CCDC43	Q96MW1	224 aa	Known RBP	10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	CASD1	Q96PB1	797 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	C11orf84	Q9BUA3	381 aa	Predicted RBP	10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	TMEM117	Q9H0C3	514 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	POLR3F	Q9H1D9	316 aa	Predicted RBP	10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	KIAA1024	Q9UPX6	916 aa		10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	PIN4	Q9Y237	131 aa	Known RBP	10.78	□□□□□ -0.68
VRK3-215	ENST00000599138	ARHGEF35	A5YM69	484 aa		10.77	□□□□□ -0.69
VRK3-215	ENST00000599138	GRM6	O15303	877 aa		10.77	□□□□□ -0.69
VRK3-215	ENST00000599138	BMP15	O95972	392 aa		10.77	□□□□□ -0.69
VRK3-215	ENST00000599138	CDC25A	P30304	524 aa		10.77	□□□□□ -0.69
VRK3-215	ENST00000599138	RAB27A	P51159	221 aa		10.77	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms