RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 NTPCRQ9BSD7 190 aaKnown RBP27.67■■■□□ 2.02
SHMT1-207ENST00000580002 PPME1Q9Y570 386 aa27.67■■■□□ 2.02
SHMT1-207ENST00000580002 ZMYM2Q9UBW7 1377 aa27.67■■■□□ 2.02
SHMT1-207ENST00000580002 TISP43B9A030 160 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 UVSSAQ2YD98 709 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 SLC9C1Q4G0N8 1177 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 ZCWPW2Q504Y3 356 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 IER5Q5VY09 327 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 TAS1R3Q7RTX0 852 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 GTPBP4Q9BZE4 634 aaKnown RBP27.66■■■□□ 2.02
SHMT1-207ENST00000580002 COL1A2P08123 1366 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 GRIN2DO15399 1336 aa27.66■■■□□ 2.02
SHMT1-207ENST00000580002 TGFB1I1O43294 461 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 RTP1P59025 263 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 LAMTOR4Q0VGL1 99 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 KNOP1Q1ED39 458 aaKnown RBP27.65■■■□□ 2.02
SHMT1-207ENST00000580002 BMT2Q1RMZ1 405 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 RUFY4Q6ZNE9 571 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 IRF2BP1Q8IU81 584 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 RHPN2Q8IUC4 686 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 SPIRE2Q8WWL2 714 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 SRRTQ9BXP5 876 aaKnown RBP27.65■■■□□ 2.02
SHMT1-207ENST00000580002 LRRIQ4A6NIV6 560 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 TREHO43280 583 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 VTNP04004 478 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 SRGAP2CP0DJJ0 459 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 CST5P28325 142 aaPredicted RBP27.65■■■□□ 2.02
SHMT1-207ENST00000580002 ADAM17P78536 824 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 GTF2BQ00403 316 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 IFT74Q96LB3 600 aa27.65■■■□□ 2.02
SHMT1-207ENST00000580002 DENND3A2RUS2 1198 aa27.64■■■□□ 2.02
SHMT1-207ENST00000580002 EIF3DO15371 548 aaKnown RBP eCLIP27.64■■■□□ 2.02
SHMT1-207ENST00000580002 MAPTP10636 758 aaKnown RBP27.64■■■□□ 2.02
SHMT1-207ENST00000580002 NFRKBQ6P4R8 1299 aa27.64■■■□□ 2.02
SHMT1-207ENST00000580002 C17orf75Q9HAS0 396 aa27.64■■■□□ 2.02
SHMT1-207ENST00000580002 PCDHB13Q9Y5F0 798 aa27.64■■■□□ 2.02
SHMT1-207ENST00000580002 NRCAMQ92823 1304 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 CLIC2O15247 247 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 KPNA6O60684 536 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 ZNF18P17022 549 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 CTU1Q7Z7A3 348 aaKnown RBP27.63■■■□□ 2.01
SHMT1-207ENST00000580002 KIAA0319LQ8IZA0 1049 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 PSPC1Q8WXF1 523 aaKnown RBP27.63■■■□□ 2.01
SHMT1-207ENST00000580002 MAGEB2O15479 319 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 ZEB2O60315 1214 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 EDN1P05305 212 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 SMTNP53814 917 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 TPD52L1Q16890 204 aaPredicted RBP27.63■■■□□ 2.01
SHMT1-207ENST00000580002 RNF180Q86T96 592 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 C7orf31Q8N865 590 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 KATNAL1Q9BW62 490 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 ST6GALNAC4Q9H4F1 302 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 ARHGAP28Q9P2N2 729 aa27.63■■■□□ 2.01
SHMT1-207ENST00000580002 TRIP12Q14669 1992 aaPredicted RBP27.62■■■□□ 2.01
SHMT1-207ENST00000580002 RRN3P2A6NIE6 340 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 CCL5P13501 91 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 PPP1R2P41236 205 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 NAMPTP43490 491 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 CSGALNACT2Q8N6G5 542 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 RNF149Q8NC42 400 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 RETREG2Q8NC44 543 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 TCP11Q8WWU5 503 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 DEFB118Q96PH6 123 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 FAM49AQ9H0Q0 323 aaPredicted RBP27.62■■■□□ 2.01
SHMT1-207ENST00000580002 TBX20Q9UMR3 447 aa27.62■■■□□ 2.01
SHMT1-207ENST00000580002 MBLAC1A4D2B0 266 aaPredicted RBP27.61■■■□□ 2.01
SHMT1-207ENST00000580002 CSDE1O75534 798 aaKnown RBP27.61■■■□□ 2.01
SHMT1-207ENST00000580002 ACLYP53396 1101 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 TMEM62Q0P6H9 643 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 CDKAL1Q5VV42 579 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 NLRP4Q96MN2 994 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 AKT3Q9Y243 479 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 KAT6AQ92794 2004 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 SCN10AQ9Y5Y9 1956 aa27.61■■■□□ 2.01
SHMT1-207ENST00000580002 BICDL2A1A5D9 508 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 C17orf102A2RUQ5 167 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 MSCO60682 206 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 GDF6Q6KF10 455 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-207ENST00000580002 LRRC55Q6ZSA7 311 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 CREBRFQ8IUR6 639 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 EXOC8Q8IYI6 725 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 DEPTORQ8TB45 409 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 JPH2Q9BR39 696 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-207ENST00000580002 RNF208Q9H0X6 261 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 PAK6Q9NQU5 681 aaPredicted RBP27.6■■■□□ 2.01
SHMT1-207ENST00000580002 TTLL13PA6NNM8 815 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 ANKRD63C9JTQ0 380 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 GAS2O43903 313 aaKnown RBP27.6■■■□□ 2.01
SHMT1-207ENST00000580002 HOXC8P31273 242 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 PCSK9Q8NBP7 692 aaKnown RBP27.6■■■□□ 2.01
SHMT1-207ENST00000580002 ACCSQ96QU6 501 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 TRAF3IP3Q9Y228 551 aa27.6■■■□□ 2.01
SHMT1-207ENST00000580002 CYP2C9P11712 490 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 CTCFP49711 727 aaPredicted RBP27.59■■■□□ 2.01
SHMT1-207ENST00000580002 DNM2P50570 870 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 FAM47CQ5HY64 1035 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 SYCP3Q8IZU3 236 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 ZSWIM2Q8NEG5 633 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 VTI1AQ96AJ9 217 aa27.59■■■□□ 2.01
SHMT1-207ENST00000580002 MINDY3Q9H8M7 445 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms