RNA–Protein interactions for RNA: ENST00000578995.5

SMARCE1-215, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 2

Gene SMARCE1, Length 534 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-215ENST00000578995 ZSCAN31Q96LW9 406 aaPredicted RBP4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 MBOAT7Q96N66 472 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 PDCD2LQ9BRP1 358 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 TINF2Q9BSI4 451 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 TSPAN10Q9H1Z9 355 aaPredicted RBP4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 UPF2Q9HAU5 1272 aaKnown RBP4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 RIC8AQ9NPQ8 531 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 SH3GLB2Q9NR46 395 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 PXMP2Q9NR77 195 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 TMEM260Q9NX78 707 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 MAP3K20Q9NYL2 800 aaKnown RBP4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 ORC3Q9UBD5 711 aaPredicted RBP4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 PNMA2Q9UL42 364 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 MRPL11Q9Y3B7 192 aaKnown RBP4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 SYNGAP1Q96PV0 1343 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 KIAA1671Q9BY89 1806 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 ANK1P16157 1881 aa4.35□□□□□ -1.71
SMARCE1-215ENST00000578995 C11orf97A0A1B0GVM6 126 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 DHX16O60231 1041 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 CFBP00751 764 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 MMP1P03956 469 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 HMGCRP04035 888 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 CCND3P30281 292 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 GRK4P32298 578 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 SREBF1P36956 1147 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 NAPAP54920 295 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 FGD1P98174 961 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 SSRP1Q08945 709 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 KCTD2Q14681 263 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PGM5Q15124 567 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PKN2Q16513 984 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 ECM1Q16610 540 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 KRT40Q6A162 431 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 CCSAPQ6IQ19 270 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 B3GNT9Q6UX72 402 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 NSMFQ6X4W1 530 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 ARMCX2Q7L311 632 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 FBXO18Q8NFZ0 1043 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 COL26A1Q96A83 441 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 DDX11Q96FC9 970 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 INTS4Q96HW7 963 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PGBD1Q96JS3 809 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 INPP4AQ96PE3 977 aaPredicted RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PPP1R16BQ96T49 567 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 ALG1Q9BT22 464 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 RNF208Q9H0X6 261 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 UPF3AQ9H1J1 476 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 BCAS3Q9H6U6 928 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PDGFCQ9NRA1 345 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 SEC63Q9UGP8 760 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 NRBP1Q9UHY1 535 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 DMGDHQ9UI17 866 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 ISY1Q9ULR0 285 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PCDHA6Q9UN73 950 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PCDHA4Q9UN74 947 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 KCNJ14Q9UNX9 436 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 TRIM33Q9UPN9 1127 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 GNEQ9Y223 722 aaKnown RBP4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 TELO2Q9Y4R8 837 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 PCDHA8Q9Y5H6 950 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 UBIAD1Q9Y5Z9 338 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 TRIP11Q15643 1979 aa4.34□□□□□ -1.71
SMARCE1-215ENST00000578995 CEP290O15078 2479 aa4.34□□□□□ -1.72
SMARCE1-215ENST00000578995 SYNRGQ9UMZ2 1314 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 MYADML2A6NDP7 307 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 SMCO2A6NFE2 343 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 FAM86B1E9PN63 330 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 GCOM1H8Y6P7 765 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 CPLX1O14810 134 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 CDKL5O76039 1030 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 TSPAN15O95858 294 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 PSAPP07602 524 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 CYP3A4P08684 503 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 FAM86B2P0C5J1 330 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 POLR2MP0CAP2 368 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 COL6A1P12109 1028 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 SKIP12755 728 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 HOXD8P13378 290 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 CCL5P13501 91 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 KCNA2P16389 499 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 U2AF2P26368 475 aaKnown RBP eCLIP4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 CALML3P27482 149 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 HOXD10P28358 340 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 GJB2P29033 226 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 ICAM3P32942 547 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 CIITAP33076 1130 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 TOB1P50616 345 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 ADCY7P51828 1080 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 UBXN2AP68543 259 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 SP2Q02086 613 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 TRAF1Q13077 416 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 AP3B2Q13367 1082 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 PKP1Q13835 747 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 KIF22Q14807 665 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 PRAMEF19Q5SWL8 479 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 GJC2Q5T442 439 aaPredicted RBP4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 WDR78Q5VTH9 848 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 PCNX4Q63HM2 1172 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 FAM117BQ6P1L5 589 aa4.33□□□□□ -1.72
SMARCE1-215ENST00000578995 FDX2Q6P4F2 183 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms