RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 FIBCD1Q8N539 461 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 RNF169Q8NCN4 708 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 RASSF8Q8NHQ8 419 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 MAFAQ8NHW3 353 aaPredicted RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 FOXD4L4Q8WXT5 416 aaPredicted RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 PPM1EQ8WY54 764 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 DBR1Q9UK59 544 aaKnown RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 PIN4Q9Y237 131 aaKnown RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 XRCC6P12956 609 aaKnown RBP eCLIP21.66■■□□□ 1.06
SS18-209ENST00000578595 CEBPZQ03701 1054 aaKnown RBP21.66■■□□□ 1.06
SS18-209ENST00000578595 RESTQ13127 1097 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 MXD4Q14582 209 aaPredicted RBP21.66■■□□□ 1.06
SS18-209ENST00000578595 IL17AQ16552 155 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 FAM102BQ5T8I3 360 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 SLC24A5Q71RS6 500 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 GDPD5Q8WTR4 605 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 C17orf80Q9BSJ5 609 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 BHMT2Q9H2M3 363 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 RGS18Q9NS28 235 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 RNF216Q9NWF9 866 aaPredicted RBP21.66■■□□□ 1.06
SS18-209ENST00000578595 MTMR6Q9Y217 621 aa21.66■■□□□ 1.06
SS18-209ENST00000578595 ASAP2O43150 1006 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 GTPBP6O43824 516 aaPredicted RBP21.65■■□□□ 1.06
SS18-209ENST00000578595 MUTP22033 750 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 ECM1Q16610 540 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 ARL6IP4Q66PJ3 421 aaKnown RBP21.65■■□□□ 1.06
SS18-209ENST00000578595 TWF2Q6IBS0 349 aaKnown RBP21.65■■□□□ 1.06
SS18-209ENST00000578595 FAM173BQ6P4H8 233 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 PADI6Q6TGC4 694 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 MCPH1Q8NEM0 835 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 FBXO22Q8NEZ5 403 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 ASAP3Q8TDY4 903 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 PLIN2Q99541 437 aa21.65■■□□□ 1.06
SS18-209ENST00000578595 COL4A6Q14031 1691 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 EPOPA6NHQ4 379 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 LRRIQ4A6NIV6 560 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 ERLIN2O94905 339 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 SSBP05455 408 aaKnown RBP eCLIP21.64■■□□□ 1.05
SS18-209ENST00000578595 CTNNB1P35222 781 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 GATMP50440 423 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 SPOUT1Q5T280 376 aaKnown RBP21.64■■□□□ 1.05
SS18-209ENST00000578595 SRGAP1Q7Z6B7 1085 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 SP7Q8TDD2 431 aaPredicted RBP21.64■■□□□ 1.05
SS18-209ENST00000578595 GPRC5CQ9NQ84 441 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 DACT1Q9NYF0 836 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 DNM3Q9UQ16 869 aa21.64■■□□□ 1.05
SS18-209ENST00000578595 C9IYK1 514 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 E9PMD0 336 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 INO80B-WBP1J3KQ70 363 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 DGKIO75912 1065 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 ERVK-21P61565 698 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 DSC3Q14574 896 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 CCDC85BQ15834 202 aaPredicted RBP21.63■■□□□ 1.05
SS18-209ENST00000578595 FAM43BQ6ZT52 329 aaPredicted RBP21.63■■□□□ 1.05
SS18-209ENST00000578595 IFT122Q9HBG6 1241 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 CLIC4Q9Y696 253 aa21.63■■□□□ 1.05
SS18-209ENST00000578595 CDH23Q9H251 3354 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 TBKBP1A7MCY6 615 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 GLRA2P23416 452 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 CAPSQ13938 189 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 ADGRE1Q14246 886 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 CABP7Q86V35 215 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 ABI1Q8IZP0 508 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 SAMD11Q96NU1 681 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 ZSCAN16Q9H4T2 348 aaPredicted RBP21.62■■□□□ 1.05
SS18-209ENST00000578595 TMEM161AQ9NX61 479 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 CHD7Q9P2D1 2997 aa21.62■■□□□ 1.05
SS18-209ENST00000578595 FGFR1P11362 822 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 MARCKSP29966 332 aaPredicted RBP21.61■■□□□ 1.05
SS18-209ENST00000578595 ARL2P36404 184 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 UBA7P41226 1012 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 GRB10Q13322 594 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 TMEM192Q8IY95 271 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 CMTR2Q8IYT2 770 aaKnown RBP21.61■■□□□ 1.05
SS18-209ENST00000578595 CALML4Q96GE6 196 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 MMTAG2Q9BU76 263 aaKnown RBP21.61■■□□□ 1.05
SS18-209ENST00000578595 NT5C3AQ9H0P0 336 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 MINDY3Q9H8M7 445 aa21.61■■□□□ 1.05
SS18-209ENST00000578595 MYO7AQ13402 2215 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 CSPG5O95196 566 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 EYA4O95677 639 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 LIG1P18858 919 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 CYP11B2P19099 503 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 NCBP1Q09161 790 aaKnown RBP21.6■■□□□ 1.05
SS18-209ENST00000578595 TMEM132AQ24JP5 1023 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 LONRF3Q496Y0 759 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 EPC2Q52LR7 807 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 ECHDC2Q86YB7 292 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 ZBTB8OSQ8IWT0 167 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 AK8Q96MA6 479 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 RC3H2Q9HBD1 1191 aaKnown RBP21.6■■□□□ 1.05
SS18-209ENST00000578595 POLD4Q9HCU8 107 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 CHST12Q9NRB3 414 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 RWDD3Q9Y3V2 267 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 TDRD15B5MCY1 1934 aaKnown RBP21.6■■□□□ 1.05
SS18-209ENST00000578595 ATG2AQ2TAZ0 1938 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 PLXNA4Q9HCM2 1894 aa21.6■■□□□ 1.05
SS18-209ENST00000578595 HOXA2O43364 376 aa21.59■■□□□ 1.05
SS18-209ENST00000578595 PTENP60484 403 aa21.59■■□□□ 1.05
SS18-209ENST00000578595 SKIV2LQ15477 1246 aaKnown RBP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms