RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 ANGEL2Q5VTE6 544 aaKnown RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 C4orf50Q6ZRC1 276 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 SYDE1Q6ZW31 735 aaPredicted RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 ZNF804AQ7Z570 1209 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ARL6IP6Q8N6S5 226 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 CCDC34Q96HJ3 373 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 SLC26A6Q9BXS9 759 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 HELLSQ9NRZ9 838 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 TOPORSQ9NS56 1045 aaPredicted RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 DIAPH3Q9NSV4 1193 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 NKIRAS2Q9NYR9 191 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 NDOR1Q9UHB4 597 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 DENND2AQ9ULE3 1009 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 LRCH1Q9Y2L9 728 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 SNX5Q9Y5X3 404 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 FOXP2O15409 715 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 RNF113AO15541 343 aaKnown RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 AP1G1O43747 822 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA12O60330 932 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 MAFKO60675 156 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 IL33O95760 270 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 FGFR1P11362 822 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PDE6AP16499 860 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ZNF131P52739 623 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ZMYM1Q5SVZ6 1142 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 HIBCHQ6NVY1 386 aaPredicted RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 CERS5Q8N5B7 392 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 OR2C3Q8N628 320 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 FAM193BQ96PV7 902 aaPredicted RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 FAM167BQ9BTA0 163 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 LSM14BQ9BX40 385 aaKnown RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 USP26Q9BXU7 913 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ARFGAP3Q9NP61 516 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 MRGBPQ9NV56 204 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA9Q9Y5G4 932 aaKnown RBP7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA8Q9Y5G5 932 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA7Q9Y5G6 932 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA6Q9Y5G7 932 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA3Q9Y5H0 932 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 PCDHGA2Q9Y5H1 932 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 MAST3O60307 1309 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 ZNF532Q9HCE3 1301 aa7.75□□□□□ -1.17
VPS53-217ENST00000575100 TNRC18O15417 2968 aaPredicted RBP7.74□□□□□ -1.17
VPS53-217ENST00000575100 SYNDIG1LA6NDD5 238 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 RRN3P2A6NIE6 340 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 CAPNS1P04632 268 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 ITPKAP23677 461 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 ADD1P35611 737 aaKnown RBP7.74□□□□□ -1.17
VPS53-217ENST00000575100 KRT20P35900 424 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 GRIK1P39086 918 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 SOX10P56693 466 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 PKN2Q16513 984 aaKnown RBP7.74□□□□□ -1.17
VPS53-217ENST00000575100 IFIT1BQ5T764 474 aaKnown RBP7.74□□□□□ -1.17
VPS53-217ENST00000575100 CDCA2Q69YH5 1023 aaPredicted RBP7.74□□□□□ -1.17
VPS53-217ENST00000575100 LCA5Q86VQ0 697 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 BRSK2Q8IWQ3 736 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 ZNF280CQ8ND82 737 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 FAM156AQ8NDB6 213 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 SUSD3Q96L08 255 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 TTLL2Q9BWV7 592 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 LSG1Q9H089 658 aaKnown RBP7.74□□□□□ -1.17
VPS53-217ENST00000575100 RNF38Q9H0F5 515 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 MYOZ2Q9NPC6 264 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 LRP2BPQ9P2M1 347 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 TMEM98Q9Y2Y6 226 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 SNCAIPQ9Y6H5 919 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 RFX7Q2KHR2 1363 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 MYH13Q9UKX3 1938 aa7.74□□□□□ -1.17
VPS53-217ENST00000575100 PDS5AQ29RF7 1337 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 TRIM64CA6NLI5 447 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 GOLGA6L6A8MZA4 724 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TIPRLO75663 272 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 GRNP28799 593 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 SNX16P57768 344 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 BPIFB3P59826 476 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 MECOMQ03112 1051 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TNFAIP2Q03169 654 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 ZNF267Q14586 743 aaPredicted RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 SLC45A4Q5BKX6 768 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 ADAMTS18Q8TE60 1221 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 AFAP1L1Q8TED9 768 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 NSUN4Q96CB9 384 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 AHCYL2Q96HN2 611 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 LRCH3Q96II8 777 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TBC1D32Q96NH3 1257 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 COA1Q9GZY4 146 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 LMAN2LQ9H0V9 348 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TMEM51Q9NW97 253 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 GIMAP2Q9UG22 337 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 PALD1Q9ULE6 856 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 TAF6LQ9Y6J9 622 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 MYO3BQ8WXR4 1341 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 PQBP1O60828 265 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 PABPC1P11940 636 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 IDEP14735 1019 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 DHX9Q08211 1270 aaKnown RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 CACNB2Q08289 660 aaPredicted RBP7.73□□□□□ -1.17
VPS53-217ENST00000575100 FAPQ12884 760 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 AP3B2Q13367 1082 aa7.73□□□□□ -1.17
VPS53-217ENST00000575100 SEMA5AQ13591 1074 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms