RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 KIF2AO00139 706 aaPredicted RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 MAPK13O15264 365 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 HIP1RO75146 1068 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 FARP2O94887 1054 aaPredicted RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 CYP2C8P10632 490 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 EPB41P11171 864 aaKnown RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 CLCN1P35523 988 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 FSTL1Q12841 308 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 TBX2Q13207 712 aaPredicted RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 DMP1Q13316 513 aaPredicted RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 GRB14Q14449 540 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 CCDC40Q4G0X9 1142 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 VWA3BQ502W6 1294 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 CELF3Q5SZQ8 465 aaKnown RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 IQSEC1Q6DN90 963 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 SMYD5Q6GMV2 418 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 CYFIP1Q7L576 1253 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 APTXQ7Z2E3 356 aaKnown RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 RASAL3Q86YV0 1011 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 CREBRFQ8IUR6 639 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 C12orf56Q8IXR9 622 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 KIAA1524Q8TCG1 905 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 TCP11Q8WWU5 503 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 SOCS4Q8WXH5 440 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 VTI1AQ96AJ9 217 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 ZNF775Q96BV0 537 aaPredicted RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 CNOT6LQ96LI5 555 aaKnown RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 NAP1L5Q96NT1 182 aaPredicted RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 ERGIC2Q96RQ1 377 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 RUSC1Q9BVN2 902 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 SLC6A16Q9GZN6 736 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 GBP3Q9H0R5 595 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 KCTD10Q9H3F6 313 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 ABHD16BQ9H3Z7 469 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 ATP6V0A4Q9HBG4 840 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 CYP26B1Q9NR63 512 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 ZNHIT6Q9NWK9 470 aaKnown RBP8.76□□□□□ -1.01
VPS39-213ENST00000570062 PKD2L1Q9P0L9 805 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 TBC1D7Q9P0N9 293 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 NRBP1Q9UHY1 535 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 FRMD4BQ9Y2L6 1034 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 TLL2Q9Y6L7 1015 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS39-213ENST00000570062 PASKQ96RG2 1323 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 IGSF9BQ9UPX0 1349 aa8.76□□□□□ -1.01
VPS39-213ENST00000570062 A0A1W2PQJ5 194 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 TMEM88BA6NKF7 163 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 ASAP2O43150 1006 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 ARHGAP6O43182 974 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 ZSCAN12O43309 604 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 TLR2O60603 784 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 PPFIA4O75335 1185 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 LGR5O75473 907 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 GGPS1O95749 300 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 GH1P01241 217 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 TXNP10599 105 aaKnown RBP8.75□□□□□ -1.01
VPS39-213ENST00000570062 SKILP12757 684 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 UBA1P22314 1058 aaKnown RBP8.75□□□□□ -1.01
VPS39-213ENST00000570062 PTGS1P23219 599 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 NR2F2P24468 414 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 ADORA2AP29274 412 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 PSMC2P35998 433 aaKnown RBP8.75□□□□□ -1.01
VPS39-213ENST00000570062 PBX1P40424 430 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 TM4SF4P48230 202 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 GTF2BQ00403 316 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 CDC42EP1Q00587 391 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 CETN1Q12798 172 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 BRDTQ58F21 947 aaPredicted RBP8.75□□□□□ -1.01
VPS39-213ENST00000570062 CCDC62Q6P9F0 684 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 GPR142Q7Z601 462 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 IRF2BP1Q8IU81 584 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 SCUBE3Q8IX30 993 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 SYCP3Q8IZU3 236 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 TXLNBQ8N3L3 684 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 PXYLP1Q8TE99 480 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 PURBQ96QR8 312 aaKnown RBP8.75□□□□□ -1.01
VPS39-213ENST00000570062 UIMC1Q96RL1 719 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 VPS16Q9H269 839 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 NDST4Q9H3R1 872 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 EFCC1Q9HA90 598 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 KIAA1586Q9HCI6 787 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 ARMCX3Q9UH62 379 aaPredicted RBP8.75□□□□□ -1.01
VPS39-213ENST00000570062 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS39-213ENST00000570062 MYH7BA7E2Y1 1941 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 EMSYQ7Z589 1322 aa8.75□□□□□ -1.01
VPS39-213ENST00000570062 A0A0G2JMZ2 1700 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 RLFQ13129 1914 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 NPHP3-ACAD11A0A0J9YXS1 232 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 GTPBP10A4D1E9 387 aaKnown RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 TRIM49BA6NDI0 452 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 PES1O00541 588 aaKnown RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 MAGEB2O15479 319 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 HBP1O60381 514 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 NR3C1P04150 777 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 PGK2P07205 417 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 XRCC5P13010 732 aaKnown RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 TCF7P36402 384 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 EFNA5P52803 228 aa8.74□□□□□ -1.01
VPS39-213ENST00000570062 POLGP54098 1239 aaPredicted RBP8.74□□□□□ -1.01
VPS39-213ENST00000570062 PMS1P54277 932 aaKnown RBP8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms