RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 INPPL1O15357 1258 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 CNPP09543 421 aaKnown RBP12.92□□□□□ -0.34
CDH3-208ENST00000569036 POLR2MP0CAP2 368 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 SIM2Q14190 667 aaPredicted RBP12.92□□□□□ -0.34
CDH3-208ENST00000569036 PLCB4Q15147 1175 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 ASPRV1Q53RT3 343 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 ZMYM1Q5SVZ6 1142 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 SIRT2Q8IXJ6 389 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 HELQQ8TDG4 1101 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 SMG7Q92540 1137 aaKnown RBP12.92□□□□□ -0.34
CDH3-208ENST00000569036 EVPLQ92817 2033 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 LSM14BQ9BX40 385 aaKnown RBP12.92□□□□□ -0.34
CDH3-208ENST00000569036 VN1R3Q9BXE9 311 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 EMILIN2Q9BXX0 1053 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 RXFP3Q9NSD7 469 aa12.92□□□□□ -0.34
CDH3-208ENST00000569036 FAM217BQ9NTX9 383 aaPredicted RBP12.92□□□□□ -0.34
CDH3-208ENST00000569036 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.92□□□□□ -0.34
CDH3-208ENST00000569036 SF3A2Q15428 464 aaKnown RBP12.91□□□□□ -0.34
CDH3-208ENST00000569036 CCDC6Q16204 474 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 STPG1Q5TH74 334 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 TSHZ3Q63HK5 1081 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 MTHFD1LQ6UB35 978 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 ECHDC2Q86YB7 292 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 RNF169Q8NCN4 708 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 GIMAP8Q8ND71 665 aaPredicted RBP12.91□□□□□ -0.34
CDH3-208ENST00000569036 PNMA1Q8ND90 353 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 FGF14Q92915 247 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 ZNF707Q96C28 371 aaPredicted RBP12.91□□□□□ -0.34
CDH3-208ENST00000569036 KIF12Q96FN5 646 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 IGSF21Q96ID5 467 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 PCYT2Q99447 389 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 MRPL9Q9BYD2 267 aaKnown RBP12.91□□□□□ -0.34
CDH3-208ENST00000569036 DOCK6Q96HP0 2047 aa12.91□□□□□ -0.34
CDH3-208ENST00000569036 NCAM2O15394 837 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 ATP9AO75110 1047 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 ZC3H11AO75152 810 aaKnown RBP eCLIP12.9□□□□□ -0.34
CDH3-208ENST00000569036 HMMRO75330 724 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 RFPL2O75678 378 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 TOP3BO95985 862 aaKnown RBP12.9□□□□□ -0.34
CDH3-208ENST00000569036 KCNA2P16389 499 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 FZD5Q13467 585 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 VPS53Q5VIR6 699 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 PARM1Q6UWI2 310 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 IPO9Q96P70 1041 aaKnown RBP12.9□□□□□ -0.34
CDH3-208ENST00000569036 OSMRQ99650 979 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 SDK1Q7Z5N4 2213 aa12.9□□□□□ -0.34
CDH3-208ENST00000569036 TENM4Q6N022 2769 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 HRO43593 1189 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 SMARCA5O60264 1052 aaPredicted RBP12.89□□□□□ -0.35
CDH3-208ENST00000569036 SSBP05455 408 aaKnown RBP eCLIP12.89□□□□□ -0.35
CDH3-208ENST00000569036 MYBP10242 640 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 DEKP35659 375 aaKnown RBP12.89□□□□□ -0.35
CDH3-208ENST00000569036 SRSF5Q13243 272 aaKnown RBP12.89□□□□□ -0.35
CDH3-208ENST00000569036 TPRG1Q6ZUI0 275 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 KIAA0319LQ8IZA0 1049 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 C12orf50Q8NA57 414 aaPredicted RBP12.89□□□□□ -0.35
CDH3-208ENST00000569036 PPP1R16BQ96T49 567 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 NELL2Q99435 816 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 ZKSCAN3Q9BRR0 538 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 ANKFY1Q9P2R3 1169 aa12.89□□□□□ -0.35
CDH3-208ENST00000569036 MTCL1Q9Y4B5 1905 aaKnown RBP12.89□□□□□ -0.35
CDH3-208ENST00000569036 TRIM6-TRIM34B2RNG4 842 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 GIPC1O14908 333 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 LILRB3O75022 631 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 PAPLNO95428 1278 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 MS4A1P11836 297 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 NOVA1P51513 510 aaKnown RBP12.88□□□□□ -0.35
CDH3-208ENST00000569036 PFKPQ01813 784 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 ZNF252P-AS1Q0IIN9 211 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 PPP2R5DQ14738 602 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 KIZQ2M2Z5 673 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 ZNF598Q86UK7 904 aaKnown RBP12.88□□□□□ -0.35
CDH3-208ENST00000569036 DGKHQ86XP1 1220 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 FAM160A2Q8N612 972 aaPredicted RBP12.88□□□□□ -0.35
CDH3-208ENST00000569036 MTMR8Q96EF0 704 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 F5P12259 2224 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 SPAG17Q6Q759 2223 aa12.88□□□□□ -0.35
CDH3-208ENST00000569036 ZBTB5O15062 677 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 PARP1P09874 1014 aaKnown RBP12.87□□□□□ -0.35
CDH3-208ENST00000569036 KLRC1P26715 233 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 CRYBB1P53674 252 aaPredicted RBP12.87□□□□□ -0.35
CDH3-208ENST00000569036 ADCY1Q08828 1119 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 ALX1Q15699 326 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 PCNX4Q63HM2 1172 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 ELMSAN1Q6PJG2 1045 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 MAMSTRQ6ZN01 415 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 PDZD3Q86UT5 571 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 NLRX1Q86UT6 975 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 ADAM32Q8TC27 787 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 TNPO1Q92973 898 aaKnown RBP12.87□□□□□ -0.35
CDH3-208ENST00000569036 PHKBQ93100 1093 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 SCNM1Q9BWG6 230 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 LRRCC1Q9C099 1032 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 CHRDQ9H2X0 955 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 KAT14Q9H8E8 782 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 PIDD1Q9HB75 910 aa12.87□□□□□ -0.35
CDH3-208ENST00000569036 ZFP37Q9Y6Q3 630 aaPredicted RBP12.87□□□□□ -0.35
CDH3-208ENST00000569036 CARNS1A5YM72 827 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 SHISA7A6NL88 538 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 GLUD1P00367 558 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms