RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 EXOC8Q8IYI6 725 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 FIBCD1Q8N539 461 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 GDPD5Q8WTR4 605 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 SNX27Q96L92 541 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 POLR3CQ9BUI4 534 aaPredicted RBP16.77■□□□□ 0.28
VPS39-210ENST00000568357 GCOM2Q9BZD3 368 aaPredicted RBP16.77■□□□□ 0.28
VPS39-210ENST00000568357 TUFT1Q9NNX1 390 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 C1orf112Q9NSG2 853 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 PCDHB7Q9Y5E2 793 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 COL4A3BPQ9Y5P4 624 aa16.77■□□□□ 0.28
VPS39-210ENST00000568357 TRANK1O15050 2925 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 STAG3L1P0CL83 205 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 SRGAP2CP0DJJ0 459 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 RPA1P27694 616 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 RARRES1P49788 294 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 LAMTOR4Q0VGL1 99 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 BTG3Q14201 252 aaPredicted RBP16.76■□□□□ 0.27
VPS39-210ENST00000568357 PDIA5Q14554 519 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 RILPL1Q5EBL4 403 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 FAM102BQ5T8I3 360 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 FBXO22Q8NEZ5 403 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 NLRP4Q96MN2 994 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 LRFN2Q9ULH4 789 aa16.76■□□□□ 0.27
VPS39-210ENST00000568357 ADGRA3Q8IWK6 1321 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 GTPBP6O43824 516 aaPredicted RBP16.75■□□□□ 0.27
VPS39-210ENST00000568357 ZSCAN20P17040 1043 aaPredicted RBP16.75■□□□□ 0.27
VPS39-210ENST00000568357 ECM1Q16610 540 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 POTEGQ6S5H5 508 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 FERMT3Q86UX7 667 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 IGSF22Q8N9C0 903 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 ERMNQ8TAM6 284 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 TCP11Q8WWU5 503 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 PSPC1Q8WXF1 523 aaKnown RBP16.75■□□□□ 0.27
VPS39-210ENST00000568357 SAMD11Q96NU1 681 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 NACC1Q96RE7 527 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 MTRQ99707 1265 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 LRWD1Q9UFC0 647 aa16.75■□□□□ 0.27
VPS39-210ENST00000568357 TTC3P53804 2025 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 GAS2O43903 313 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 DGAT1O75907 488 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 ARL2P36404 184 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 BMPR1AP36894 532 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 MRE11P49959 708 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 PAN2Q504Q3 1202 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 CMTR2Q8IYT2 770 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 CLP1Q92989 425 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 INO80BQ9C086 356 aaPredicted RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 ELAC1Q9H777 363 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 MINDY3Q9H8M7 445 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 CD320Q9NPF0 282 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 TMEM161AQ9NX61 479 aa16.74■□□□□ 0.27
VPS39-210ENST00000568357 DBR1Q9UK59 544 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 MRPL42Q9Y6G3 142 aaKnown RBP16.74■□□□□ 0.27
VPS39-210ENST00000568357 COL4A6Q14031 1691 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 PP2D1A8MPX8 630 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 H3BNC9 293 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 K7ELQ4 463 aaPredicted RBP16.73■□□□□ 0.27
VPS39-210ENST00000568357 LAD1O00515 517 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 ASAP2O43150 1006 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 FGFR1P11362 822 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 SFPQP23246 707 aaKnown RBP eCLIP16.73■□□□□ 0.27
VPS39-210ENST00000568357 CDC25AP30304 524 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 CCT6AP40227 531 aaKnown RBP16.73■□□□□ 0.27
VPS39-210ENST00000568357 PRPHP41219 470 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 ATP2C1P98194 919 aaPredicted RBP16.73■□□□□ 0.27
VPS39-210ENST00000568357 DTHD1Q6ZMT9 781 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 ECHDC2Q86YB7 292 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 RNF149Q8NC42 400 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 ASAP3Q8TDY4 903 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 ATP6V0A4Q9HBG4 840 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 CHST12Q9NRB3 414 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 FOXD4L1Q9NU39 408 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 LMCD1Q9NZU5 365 aa16.73■□□□□ 0.27
VPS39-210ENST00000568357 LOXHD1Q8IVV2 1947 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 A0A0U1RQF3 1178 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 C5orf67F2Z3F1 127 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 USO1O60763 962 aaKnown RBP16.72■□□□□ 0.27
VPS39-210ENST00000568357 GPM6BQ13491 265 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 MAEAQ7L5Y9 396 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 CATSPER4Q7RTX7 472 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 SRGAP1Q7Z6B7 1085 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 INTS4Q96HW7 963 aaKnown RBP16.72■□□□□ 0.27
VPS39-210ENST00000568357 CCDC43Q96MW1 224 aaKnown RBP16.72■□□□□ 0.27
VPS39-210ENST00000568357 GPRC5CQ9NQ84 441 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 RNF19AQ9NV58 838 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 RNF216Q9NWF9 866 aaPredicted RBP16.72■□□□□ 0.27
VPS39-210ENST00000568357 COG5Q9UP83 839 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 KIAA1024Q9UPX6 916 aa16.72■□□□□ 0.27
VPS39-210ENST00000568357 VPS37CA5D8V6 355 aaPredicted RBP16.71■□□□□ 0.27
VPS39-210ENST00000568357 TBKBP1A7MCY6 615 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 PI4K2BG5E9Z4 385 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 RB1P06400 928 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 SYT1P21579 422 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 MUTP22033 750 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 GLRA2P23416 452 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 HOXA11P31270 313 aaPredicted RBP16.71■□□□□ 0.27
VPS39-210ENST00000568357 CTNNB1P35222 781 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 PTENP60484 403 aa16.71■□□□□ 0.27
VPS39-210ENST00000568357 MXD4Q14582 209 aaPredicted RBP16.71■□□□□ 0.27
VPS39-210ENST00000568357 HAUS3Q68CZ6 603 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms