RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 DLX2Q07687 328 aaPredicted RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 TRIM29Q14134 588 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 CTTNQ14247 550 aaKnown RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 PUS10Q3MIT2 529 aaKnown RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 C4orf19Q8IY42 314 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 SLC7A3Q8WY07 619 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 KIF2CQ99661 725 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 JPH2Q9BR39 696 aaPredicted RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 LXNQ9BS40 222 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 TMEM117Q9H0C3 514 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 DHX33Q9H6R0 707 aaKnown RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 CD320Q9NPF0 282 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 AAASQ9NRG9 546 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 NLRC5Q86WI3 1866 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 LINC01565O15544 149 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 HOXA2O43364 376 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 FGF18O76093 207 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 EOMESO95936 686 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 GUCY1B3Q02153 619 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 CYP4A11Q02928 519 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 ADAM15Q13444 863 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 CALCRLQ16602 461 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 C8orf34Q49A92 452 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 CLLU1OSQ5K130 101 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 OTUD6AQ7L8S5 288 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 ADGRD2Q7Z7M1 963 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 ZNF598Q86UK7 904 aaKnown RBP11.51□□□□□ -0.57
CLK3-205ENST00000561673 ZNF410Q86VK4 478 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 CCDC83Q8IWF9 413 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 TPH2Q8IWU9 490 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 FAM178BQ8IXR5 827 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 EXOC8Q8IYI6 725 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 COLGALT1Q8NBJ5 622 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 RNF169Q8NCN4 708 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 PRPF31Q8WWY3 499 aaKnown RBP11.51□□□□□ -0.57
CLK3-205ENST00000561673 TMEM143Q96AN5 459 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 NLRP4Q96MN2 994 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 MTMR9Q96QG7 549 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 HSD17B14Q9BPX1 270 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 INO80BQ9C086 356 aaPredicted RBP11.51□□□□□ -0.57
CLK3-205ENST00000561673 ZSWIM4Q9H7M6 989 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 IFT122Q9HBG6 1241 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 CHST12Q9NRB3 414 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 DACT1Q9NYF0 836 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 PCDHA12Q9UN75 941 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 PPME1Q9Y570 386 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 PCDHGC5Q9Y5F6 944 aa11.51□□□□□ -0.57
CLK3-205ENST00000561673 NEMFO60524 1076 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 SRGAP2CP0DJJ0 459 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 ATF7P17544 494 aaPredicted RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 LAG3P18627 525 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 SFPQP23246 707 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLK3-205ENST00000561673 RFC5P40937 340 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 TXKP42681 527 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 PHKA2P46019 1235 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 POLGP54098 1239 aaPredicted RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 UBE3AQ05086 875 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 LAMTOR4Q0VGL1 99 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 CLUL1Q15846 466 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 RBM23Q86U06 439 aaKnown RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 THNSL1Q8IYQ7 743 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 ABI1Q8IZP0 508 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 SPRYD3Q8NCJ5 442 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 MICAL1Q8TDZ2 1067 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 KHSRPQ92945 711 aaKnown RBP eCLIP11.5□□□□□ -0.57
CLK3-205ENST00000561673 EIF2AK1Q9BQI3 630 aaKnown RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 LLPHQ9BRT6 129 aaKnown RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 TRAIPQ9BWF2 469 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 TTC12Q9H892 705 aaPredicted RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 BMP2KQ9NSY1 1161 aaPredicted RBP11.5□□□□□ -0.57
CLK3-205ENST00000561673 COL4A3BPQ9Y5P4 624 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 BRWD1Q9NSI6 2320 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 WDR81Q562E7 1941 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 MYO7AQ13402 2215 aa11.5□□□□□ -0.57
CLK3-205ENST00000561673 TBX10O75333 385 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 ATP2B1P20020 1258 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 PBX3P40426 434 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 NRIP1P48552 1158 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 ERVFC1P60507 584 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 PLCB3Q01970 1234 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 EMC2Q15006 297 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 SAFBQ15424 915 aaKnown RBP eCLIP11.49□□□□□ -0.57
CLK3-205ENST00000561673 CSPP1Q1MSJ5 1256 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 LONRF3Q496Y0 759 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 XKR9Q5GH70 373 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 TWF2Q6IBS0 349 aaKnown RBP11.49□□□□□ -0.57
CLK3-205ENST00000561673 KCNT2Q6UVM3 1135 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 CATSPER4Q7RTX7 472 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 GJD3Q8N144 294 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 LRRC43Q8N309 656 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 EFHBQ8N7U6 833 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 HELQQ8TDG4 1101 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 PSPC1Q8WXF1 523 aaKnown RBP11.49□□□□□ -0.57
CLK3-205ENST00000561673 PPP2R3CQ969Q6 453 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 C8orf76Q96K31 380 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 ZSCAN31Q96LW9 406 aaPredicted RBP11.49□□□□□ -0.57
CLK3-205ENST00000561673 TMEM60Q9H2L4 133 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 EPHX3Q9H6B9 360 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 MINDY3Q9H8M7 445 aa11.49□□□□□ -0.57
CLK3-205ENST00000561673 TLR9Q9NR96 1032 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms