RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-225	ENST00000561391	CHD8	Q9HCK8	2581 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	GFOD1	Q9NXC2	390 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	MIS18A	Q9NYP9	233 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	SLAMF8	Q9P0V8	285 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	SIRPG	Q9P1W8	387 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	LRP2BP	Q9P2M1	347 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	MSRA	Q9UJ68	235 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	MINPP1	Q9UNW1	487 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	ZNF451	Q9Y4E5	1061 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	REV3L	O60673	3130 aa		4.08	□□□□□ -1.76
SPG11-225	ENST00000561391	PTPRZ1	P23471	2315 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	DOCK3	Q8IZD9	2030 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	PLXNA1	Q9UIW2	1896 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	DDX60	Q8IY21	1712 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	COL1A1	P02452	1464 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	SH3TC1	Q8TE82	1336 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	SHISA3	A0PJX4	238 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	FAM221B	A6H8Z2	402 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	CBFA2T2	O43439	604 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	MMP14	P50281	582 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	PPAT	Q06203	517 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	CACNB2	Q08289	660 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	NMI	Q13287	307 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	MOGS	Q13724	837 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	SF3B3	Q15393	1217 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	TRIM60	Q495X7	471 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	MRM1	Q6IN84	353 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	NLRP10	Q86W26	655 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	ANKRD13C	Q8N6S4	541 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	TRIB2	Q92519	343 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	FAM89A	Q96GI7	184 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	TEPSIN	Q96N21	525 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	WRNIP1	Q96S55	665 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	LGR4	Q9BXB1	951 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	TMEM39B	Q9GZU3	492 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	GBP3	Q9H0R5	595 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	NOL6	Q9H6R4	1146 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	TDRD3	Q9H7E2	651 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	CWC22	Q9HCG8	908 aa	Known RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	GP6	Q9HCN6	339 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	PDLIM7	Q9NR12	457 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	SEMA3G	Q9NS98	782 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	GPATCH2	Q9NW75	528 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	PFDN2	Q9UHV9	154 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	GJD2	Q9UKL4	321 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	ST14	Q9Y5Y6	855 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	KMT2B	Q9UMN6	2715 aa	Predicted RBP	4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	LAMB2	P55268	1798 aa		4.07	□□□□□ -1.76
SPG11-225	ENST00000561391	CEMIP	Q8WUJ3	1361 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ANKRD34B	A5PLL1	514 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391		H0Y858	1186 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	SHOX	O15266	292 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	PDPK1	O15530	556 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	SUSD5	O60279	629 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	PPM1B	O75688	479 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	PRAMEF1	O95521	474 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ITGA4	P13612	1032 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	TPP2	P29144	1249 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	CNGA1	P29973	690 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ZNF445	P59923	1031 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	TLE2	Q04725	743 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	FPGS	Q05932	587 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	SERINC3	Q13530	473 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	MTERF2	Q49AM1	385 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ANKRD39	Q53RE8	183 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	GJC2	Q5T442	439 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	MAP3K21	Q5TCX8	1036 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	TCERG1L	Q5VWI1	586 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ERICH6B	Q5W0A0	696 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	GADL1	Q6ZQY3	521 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	C22orf34	Q6ZV56	151 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	MIGA2	Q7L4E1	593 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	PRRT2	Q7Z6L0	340 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	FIBCD1	Q8N539	461 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	PIWIL2	Q8TC59	973 aa	Known RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	SMCR8	Q8TEV9	937 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	FERMT2	Q96AC1	680 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	MRFAP1L1	Q96HT8	127 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	CHAMP1	Q96JM3	812 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	DEPDC7	Q96QD5	511 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	DUSP15	Q9H1R2	295 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	TRIT1	Q9H3H1	467 aa	Known RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	CERS4	Q9HA82	394 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	TLR9	Q9NR96	1032 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	CHST7	Q9NS84	486 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	SNTG2	Q9NY99	539 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ZNF70	Q9UC06	446 aa	Predicted RBP	4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	MTCH2	Q9Y6C9	303 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	LTBP2	Q14767	1821 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ANKRD36C	Q5JPF3	1778 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	LRRC37A2	A6NM11	1700 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ZFHX4	Q86UP3	3567 aa		4.06	□□□□□ -1.76
SPG11-225	ENST00000561391	ATRX	P46100	2492 aa		4.05	□□□□□ -1.76
SPG11-225	ENST00000561391	OTOF	Q9HC10	1997 aa		4.05	□□□□□ -1.76
SPG11-225	ENST00000561391	DCHS1	Q96JQ0	3298 aa		4.05	□□□□□ -1.76
SPG11-225	ENST00000561391	XDH	P47989	1333 aa		4.05	□□□□□ -1.76
SPG11-225	ENST00000561391	SSU72P8	A0A1W2PR75	194 aa		4.05	□□□□□ -1.76
SPG11-225	ENST00000561391	NOP56	O00567	594 aa	Known RBP	4.05	□□□□□ -1.76
SPG11-225	ENST00000561391	SIGLEC6	O43699	453 aa		4.05	□□□□□ -1.76

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