RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 FMR1NBQ8N0W7 255 aaPredicted RBP12.09□□□□□ -0.47
TPM1-217ENST00000559108 NME8Q8N427 588 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 CCDC155Q8N6L0 562 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 RETREG2Q8NC44 543 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 DBF4BQ8NFT6 615 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 RASSF8Q8NHQ8 419 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 MRPS27Q92552 414 aaKnown RBP12.09□□□□□ -0.47
TPM1-217ENST00000559108 FIZ1Q96SL8 496 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 MAP7D2Q96T17 732 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 ERVK-5Q9HDB9 667 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 KBTBD4Q9NVX7 518 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 CCDC39Q9UFE4 941 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 PRKAG2Q9UGJ0 569 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 KIAA1671Q9BY89 1806 aa12.09□□□□□ -0.47
TPM1-217ENST00000559108 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.08□□□□□ -0.48
TPM1-217ENST00000559108 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.08□□□□□ -0.48
TPM1-217ENST00000559108 TXLNAP40222 546 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 ZNF131P52739 623 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 CRYBB1P53674 252 aaPredicted RBP12.08□□□□□ -0.48
TPM1-217ENST00000559108 MBTD1Q05BQ5 628 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 SHHQ15465 462 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 AMHR2Q16671 573 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 RASIP1Q5U651 963 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 FAM109BQ6ICB4 259 aaPredicted RBP12.08□□□□□ -0.48
TPM1-217ENST00000559108 CHRDL2Q6WN34 429 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 DYMQ7RTS9 669 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 TMEM199Q8N511 208 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 KCTD17Q8N5Z5 321 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 RNF149Q8NC42 400 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 GLIS3Q8NEA6 775 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 MCPH1Q8NEM0 835 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 PSPC1Q8WXF1 523 aaKnown RBP12.08□□□□□ -0.48
TPM1-217ENST00000559108 HPS3Q969F9 1004 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 CCDC43Q96MW1 224 aaKnown RBP12.08□□□□□ -0.48
TPM1-217ENST00000559108 CCDC113Q9H0I3 377 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 BLZF1Q9H2G9 400 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 IKZF4Q9H2S9 585 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 PADI3Q9ULW8 664 aa12.08□□□□□ -0.48
TPM1-217ENST00000559108 FRMD3A2A2Y4 597 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 B4GALT5O43286 388 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 NR1I2O75469 434 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 EIF4BP23588 611 aaKnown RBP12.07□□□□□ -0.48
TPM1-217ENST00000559108 NPTX2P47972 431 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 TTC3P53804 2025 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 PTENP60484 403 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 DEFB103AP81534 67 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 CUL4BQ13620 913 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 DSC3Q14574 896 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 FNDC1Q4ZHG4 1894 aaPredicted RBP12.07□□□□□ -0.48
TPM1-217ENST00000559108 CDCA2Q69YH5 1023 aaPredicted RBP12.07□□□□□ -0.48
TPM1-217ENST00000559108 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.07□□□□□ -0.48
TPM1-217ENST00000559108 TSHZ1Q6ZSZ6 1077 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 OTOP2Q7RTS6 562 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 RSPH3Q86UC2 560 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 ZNF410Q86VK4 478 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 IFNLR1Q8IU57 520 aaPredicted RBP12.07□□□□□ -0.48
TPM1-217ENST00000559108 TCP11Q8WWU5 503 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 NLRP7Q8WX94 980 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 DDX12PQ92771 950 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 PAGE5Q96GU1 130 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 TRIM9Q9C026 710 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 LMBRD1Q9NUN5 540 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 FAM13BQ9NYF5 915 aa12.07□□□□□ -0.48
TPM1-217ENST00000559108 COLQQ9Y215 455 aaPredicted RBP12.07□□□□□ -0.48
TPM1-217ENST00000559108 GAS2O43903 313 aaKnown RBP12.06□□□□□ -0.48
TPM1-217ENST00000559108 KLRC4O43908 158 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 PRPF40AO75400 957 aaKnown RBP12.06□□□□□ -0.48
TPM1-217ENST00000559108 ZNF202O95125 648 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 TMOD1P28289 359 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 RFC2P35250 354 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 SYKP43405 635 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 AFMP43652 599 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 CASP5P51878 434 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 PEX3P56589 373 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 PPIGQ13427 754 aaKnown RBP eCLIP12.06□□□□□ -0.481e-10■■□□□ 13.1
TPM1-217ENST00000559108 KRBA2Q6ZNG9 492 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 SFR1Q86XK3 245 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 IQUBQ8NA54 791 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 ERCC4Q92889 916 aaPredicted RBP12.06□□□□□ -0.48
TPM1-217ENST00000559108 LBHD1Q9BQE6 289 aaPredicted RBP12.06□□□□□ -0.48
TPM1-217ENST00000559108 JPH2Q9BR39 696 aaPredicted RBP12.06□□□□□ -0.48
TPM1-217ENST00000559108 IFIH1Q9BYX4 1025 aaKnown RBP12.06□□□□□ -0.48
TPM1-217ENST00000559108 ST3GAL5Q9UNP4 418 aa12.06□□□□□ -0.48
TPM1-217ENST00000559108 TRIOBPQ9H2D6 2365 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 LRRIQ4A6NIV6 560 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 GRXCR1A8MXD5 290 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 SLC16A4O15374 487 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 TSPAN1O60635 241 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 RPS6KA5O75582 802 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 SLFN14P0C7P3 912 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 PLS3P13797 630 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 NMT1P30419 496 aaKnown RBP12.05□□□□□ -0.48
TPM1-217ENST00000559108 HOXA11P31270 313 aaPredicted RBP12.05□□□□□ -0.48
TPM1-217ENST00000559108 BMP8BP34820 402 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 NAMPTP43490 491 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 DNM2P50570 870 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 EHHADHQ08426 723 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 UBXN11Q5T124 520 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 CNKSR3Q6P9H4 555 aa12.05□□□□□ -0.48
TPM1-217ENST00000559108 SV2BQ7L1I2 683 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms