RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 CSGALNACT2Q8N6G5 542 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 KLHDC9Q8NEP7 349 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 LMBR1Q8WVP7 490 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 IFT74Q96LB3 600 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 PPP1R16BQ96T49 567 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 NTPCRQ9BSD7 190 aaKnown RBP11.24□□□□□ -0.61
SRP54-208ENST00000555557 C17orf75Q9HAS0 396 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 SUCLA2Q9P2R7 463 aaPredicted RBP11.24□□□□□ -0.61
SRP54-208ENST00000555557 PPME1Q9Y570 386 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 ARID2Q68CP9 1835 aa11.24□□□□□ -0.61
SRP54-208ENST00000555557 DENND3A2RUS2 1198 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 LRRIQ4A6NIV6 560 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 CLIC2O15247 247 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 EIF3DO15371 548 aaKnown RBP eCLIP11.23□□□□□ -0.61
SRP54-208ENST00000555557 TGFB1I1O43294 461 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 KIF20AO95235 890 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 SRGAP2CP0DJJ0 459 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 MAPTP10636 758 aaKnown RBP11.23□□□□□ -0.61
SRP54-208ENST00000555557 ZNF18P17022 549 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 CDK11BP21127 795 aaKnown RBP11.23□□□□□ -0.61
SRP54-208ENST00000555557 RTP1P59025 263 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 TPM4P67936 248 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 NKX3-2P78367 333 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 GTF2BQ00403 316 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 LAMTOR4Q0VGL1 99 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 CAPSQ13938 189 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 MTFR1Q15390 333 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 BMT2Q1RMZ1 405 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 ZCWPW2Q504Y3 356 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 IER5Q5VY09 327 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 CCSAPQ6IQ19 270 aaPredicted RBP11.23□□□□□ -0.61
SRP54-208ENST00000555557 SPIRE2Q8WWL2 714 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 PSPC1Q8WXF1 523 aaKnown RBP11.23□□□□□ -0.61
SRP54-208ENST00000555557 MTG1Q9BT17 334 aaPredicted RBP11.23□□□□□ -0.61
SRP54-208ENST00000555557 UNC93B1Q9H1C4 597 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 HDAC6Q9UBN7 1215 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 USP20Q9Y2K6 914 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 DNAH12Q6ZR08 3092 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 COL1A2P08123 1366 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 ZMYM2Q9UBW7 1377 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 TISP43B9A030 160 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 MAGEB2O15479 319 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 ZEB2O60315 1214 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 VTNP04004 478 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 NBPF20Q3BBV1 942 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 SLC9C1Q4G0N8 1177 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 NFRKBQ6P4R8 1299 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 STXBP4Q6ZWJ1 553 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 IRF2BP1Q8IU81 584 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 EXOC8Q8IYI6 725 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 LINC01465Q8N7H1 131 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 C7orf31Q8N865 590 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 RETREG2Q8NC44 543 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 TCP11Q8WWU5 503 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 TSG101Q99816 390 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 JPH2Q9BR39 696 aaPredicted RBP11.23□□□□□ -0.61
SRP54-208ENST00000555557 KATNAL1Q9BW62 490 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 PRDM10Q9NQV6 1147 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 TBX20Q9UMR3 447 aa11.23□□□□□ -0.61
SRP54-208ENST00000555557 NRCAMQ92823 1304 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 RRN3P2A6NIE6 340 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 TREHO43280 583 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 GAS2O43903 313 aaKnown RBP11.22□□□□□ -0.61
SRP54-208ENST00000555557 KPNA6O60684 536 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 ADCY5O95622 1261 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 NAMPTP43490 491 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 DNM2P50570 870 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 LRRC63Q05C16 580 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 CDKAL1Q5VV42 579 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 TAS1R3Q7RTX0 852 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 RNF180Q86T96 592 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 SYCP3Q8IZU3 236 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 RNF149Q8NC42 400 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 DEPTORQ8TB45 409 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 NLRP4Q96MN2 994 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 ACCSQ96QU6 501 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 TRIM5Q9C035 493 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.22□□□□□ -0.61
SRP54-208ENST00000555557 FAM49AQ9H0Q0 323 aaPredicted RBP11.22□□□□□ -0.61
SRP54-208ENST00000555557 ST6GALNAC4Q9H4F1 302 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 ARHGAP28Q9P2N2 729 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 TRAF3IP3Q9Y228 551 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 AKT3Q9Y243 479 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 MYH11P35749 1972 aa11.22□□□□□ -0.61
SRP54-208ENST00000555557 PDXKO00764 312 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 CST5P28325 142 aaPredicted RBP11.21□□□□□ -0.61
SRP54-208ENST00000555557 ADAM17P78536 824 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 FANCCQ00597 558 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 TMEM62Q0P6H9 643 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 ADAM9Q13443 819 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 MXD4Q14582 209 aaPredicted RBP11.21□□□□□ -0.61
SRP54-208ENST00000555557 PPP2R5AQ15172 486 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 GLIPR1L2Q4G1C9 344 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 RUFY4Q6ZNE9 571 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 KIAA0319LQ8IZA0 1049 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 VTI1AQ96AJ9 217 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 GBP3Q9H0R5 595 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 TYW1Q9NV66 732 aaKnown RBP11.21□□□□□ -0.61
SRP54-208ENST00000555557 IFNKQ9P0W0 207 aa11.21□□□□□ -0.61
SRP54-208ENST00000555557 C17orf102A2RUQ5 167 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms