RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 MINDY3Q9H8M7 445 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 ATP6V0A4Q9HBG4 840 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 TMEM161AQ9NX61 479 aa22.85■■□□□ 1.25
VTI1B-205ENST00000555543 FNDC1Q4ZHG4 1894 aaPredicted RBP22.85■■□□□ 1.25
VTI1B-205ENST00000555543 H3BNC9 293 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 DGAT1O75907 488 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 SRGAP2CP0DJJ0 459 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 ZSCAN20P17040 1043 aaPredicted RBP22.84■■□□□ 1.25
VTI1B-205ENST00000555543 SFPQP23246 707 aaKnown RBP eCLIP22.84■■□□□ 1.25
VTI1B-205ENST00000555543 BMPR1AP36894 532 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 ECM1Q16610 540 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 RILPL1Q5EBL4 403 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 IGSF22Q8N9C0 903 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 CCDC43Q96MW1 224 aaKnown RBP22.84■■□□□ 1.25
VTI1B-205ENST00000555543 ELAC1Q9H777 363 aaKnown RBP22.84■■□□□ 1.25
VTI1B-205ENST00000555543 RNF19AQ9NV58 838 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 LMCD1Q9NZU5 365 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 HCSTQ9UBK5 93 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 LRWD1Q9UFC0 647 aa22.84■■□□□ 1.25
VTI1B-205ENST00000555543 C5orf67F2Z3F1 127 aa22.83■■□□□ 1.25
VTI1B-205ENST00000555543 USO1O60763 962 aaKnown RBP22.83■■□□□ 1.25
VTI1B-205ENST00000555543 XRCC6P12956 609 aaKnown RBP eCLIP22.83■■□□□ 1.25
VTI1B-205ENST00000555543 ATF7P17544 494 aaPredicted RBP22.83■■□□□ 1.25
VTI1B-205ENST00000555543 GPM6BQ13491 265 aa22.83■■□□□ 1.25
VTI1B-205ENST00000555543 ECHDC2Q86YB7 292 aa22.83■■□□□ 1.25
VTI1B-205ENST00000555543 RNF149Q8NC42 400 aa22.83■■□□□ 1.25
VTI1B-205ENST00000555543 ASAP3Q8TDY4 903 aa22.83■■□□□ 1.25
VTI1B-205ENST00000555543 INO80BQ9C086 356 aaPredicted RBP22.83■■□□□ 1.25
VTI1B-205ENST00000555543 DBR1Q9UK59 544 aaKnown RBP22.83■■□□□ 1.25
VTI1B-205ENST00000555543 PIN4Q9Y237 131 aaKnown RBP22.83■■□□□ 1.25
VTI1B-205ENST00000555543 TBKBP1A7MCY6 615 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 PP2D1A8MPX8 630 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 LAD1O00515 517 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 PRPHP41219 470 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 HAUS3Q68CZ6 603 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 CATSPER4Q7RTX7 472 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 NACC1Q96RE7 527 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 RWDD3Q9Y3V2 267 aa22.82■■□□□ 1.24
VTI1B-205ENST00000555543 ATG2AQ2TAZ0 1938 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 A0A0U1RQF3 1178 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 ASAP2O43150 1006 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 ARL2P36404 184 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 CCT6AP40227 531 aaKnown RBP22.81■■□□□ 1.24
VTI1B-205ENST00000555543 ATP2C1P98194 919 aaPredicted RBP22.81■■□□□ 1.24
VTI1B-205ENST00000555543 CAPSQ13938 189 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 PDIA5Q14554 519 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 SRGAP1Q7Z6B7 1085 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 ZNF598Q86UK7 904 aaKnown RBP22.81■■□□□ 1.24
VTI1B-205ENST00000555543 RNF169Q8NCN4 708 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 MRPL38Q96DV4 380 aaKnown RBP22.81■■□□□ 1.24
VTI1B-205ENST00000555543 POLR3FQ9H1D9 316 aaPredicted RBP22.81■■□□□ 1.24
VTI1B-205ENST00000555543 GPRC5CQ9NQ84 441 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 CHST12Q9NRB3 414 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 RNF216Q9NWF9 866 aaPredicted RBP22.81■■□□□ 1.24
VTI1B-205ENST00000555543 THEGQ9P2T0 379 aa22.81■■□□□ 1.24
VTI1B-205ENST00000555543 VPS37CA5D8V6 355 aaPredicted RBP22.8■■□□□ 1.24
VTI1B-205ENST00000555543 K7ELQ4 463 aaPredicted RBP22.8■■□□□ 1.24
VTI1B-205ENST00000555543 GRM6O15303 877 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 RB1P06400 928 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 GLRA2P23416 452 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 MXD4Q14582 209 aaPredicted RBP22.8■■□□□ 1.24
VTI1B-205ENST00000555543 CLLU1OSQ5K130 101 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 MAEAQ7L5Y9 396 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 SNX29Q8TEQ0 813 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 C11orf84Q9BUA3 381 aaPredicted RBP22.8■■□□□ 1.24
VTI1B-205ENST00000555543 AGPAT5Q9NUQ2 364 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 DACT1Q9NYF0 836 aa22.8■■□□□ 1.24
VTI1B-205ENST00000555543 MUTP22033 750 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 CDC25AP30304 524 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 PHKA2P46019 1235 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 PTENP60484 403 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 SKIV2LQ15477 1246 aaKnown RBP22.79■■□□□ 1.24
VTI1B-205ENST00000555543 TWF2Q6IBS0 349 aaKnown RBP22.79■■□□□ 1.24
VTI1B-205ENST00000555543 CASD1Q96PB1 797 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 TRAIPQ9BWF2 469 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 TMEM117Q9H0C3 514 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 FOXD4L1Q9NU39 408 aa22.79■■□□□ 1.24
VTI1B-205ENST00000555543 CUL9Q8IWT3 2517 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 HOXA11P31270 313 aaPredicted RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 PTPROQ16827 1216 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 PADI6Q6TGC4 694 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 DTHD1Q6ZMT9 781 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 IFNLR1Q8IU57 520 aaPredicted RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 INTS4Q96HW7 963 aaKnown RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 MMTAG2Q9BU76 263 aaKnown RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 PLVAPQ9BX97 442 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 RAB34Q9BZG1 259 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 ALG13Q9NP73 1137 aaKnown RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 DDX19AQ9NUU7 478 aaKnown RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 TYW1Q9NV66 732 aaKnown RBP22.78■■□□□ 1.24
VTI1B-205ENST00000555543 KIAA1024Q9UPX6 916 aa22.78■■□□□ 1.24
VTI1B-205ENST00000555543 ARHGEF35A5YM69 484 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 ITGB1P05556 798 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 MBTD1Q05BQ5 628 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 TFDP1Q14186 410 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 LRRC55Q6ZSA7 311 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 BRAPQ7Z569 592 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 KLHL23Q8NBE8 558 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 HELQQ8TDG4 1101 aa22.77■■□□□ 1.24
VTI1B-205ENST00000555543 LPPQ93052 612 aa22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms