RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ABL1P00519 1130 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 OSBPP22059 807 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 RWDD2BP57060 319 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 GPC5P78333 572 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 ITIH3Q06033 890 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.52■□□□□ 0.39
CUX1-213ENST00000549414 NEK9Q8TD19 979 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 PPM1EQ8WY54 764 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 MED10Q9BTT4 135 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 LACRTQ9GZZ8 138 aa17.52■□□□□ 0.39
CUX1-213ENST00000549414 POLR3FQ9H1D9 316 aaPredicted RBP17.52■□□□□ 0.39
CUX1-213ENST00000549414 NR1D1P20393 614 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 SHMT1P34896 483 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 ZNF131P52739 623 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 MKRN4PQ13434 485 aaPredicted RBP17.51■□□□□ 0.39
CUX1-213ENST00000549414 CYP2W1Q8TAV3 490 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 WHAMMQ8TF30 809 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 TUFT1Q9NNX1 390 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 CHORDC1Q9UHD1 332 aaPredicted RBP17.51■□□□□ 0.39
CUX1-213ENST00000549414 AMACRQ9UHK6 382 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 CYP26A1O43174 497 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 SOX5P35711 763 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 RIOX1Q9H6W3 641 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 NRXN3Q9Y4C0 1643 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 CAPN9O14815 690 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 CTNND1O60716 968 aaKnown RBP17.51■□□□□ 0.39
CUX1-213ENST00000549414 RFX6Q8HWS3 928 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 LRRN4CLQ8ND94 238 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 ZDHHC15Q96MV8 337 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 RUSC1Q9BVN2 902 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 EDEM3Q9BZQ6 932 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 MRPL47Q9HD33 250 aaKnown RBP17.51■□□□□ 0.39
CUX1-213ENST00000549414 ANAPC5Q9UJX4 755 aa17.51■□□□□ 0.39
CUX1-213ENST00000549414 SARSP49591 514 aaKnown RBP17.51■□□□□ 0.39
CUX1-213ENST00000549414 TBX3O15119 743 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 EVI5O60447 810 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 KLRC1P26715 233 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 FYB2Q5VWT5 728 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 KRT39Q6A163 491 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 ACAD9Q9H845 621 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 CD2APQ9Y5K6 639 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 CCDC188H7C350 402 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 TFRCP02786 760 aaKnown RBP17.5■□□□□ 0.39
CUX1-213ENST00000549414 FMO5P49326 533 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 TRIM11Q96F44 468 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 ZNF302Q9NR11 478 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 BAIAP2L1Q9UHR4 511 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 MAD1L1Q9Y6D9 718 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 POLRMTO00411 1230 aaKnown RBP17.5■□□□□ 0.39
CUX1-213ENST00000549414 GALCP54803 685 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 CFAP157Q5JU67 520 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 TMEM143Q96AN5 459 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 ERGIC2Q96RQ1 377 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 KCNH7Q9NS40 1196 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 SEPT10Q9P0V9 454 aa17.5■□□□□ 0.39
CUX1-213ENST00000549414 NOC2LQ9Y3T9 749 aaKnown RBP17.5■□□□□ 0.39
CUX1-213ENST00000549414 SFNP31947 248 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 YWHAGP61981 247 aaKnown RBP eCLIP17.49■□□□□ 0.39
CUX1-213ENST00000549414 JPH2Q9BR39 696 aaPredicted RBP17.49■□□□□ 0.39
CUX1-213ENST00000549414 KIFC3Q9BVG8 833 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 NUP85Q9BW27 656 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 STK10O94804 968 aaKnown RBP17.49■□□□□ 0.39
CUX1-213ENST00000549414 CASP4P49662 377 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 ACOT2P49753 483 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 CDO1Q16878 200 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 CCDC14Q49A88 953 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 DNAAF5Q86Y56 855 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 COG1Q8WTW3 980 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 ATG4CQ96DT6 458 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 ZWILCHQ9H900 591 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.49■□□□□ 0.39
CUX1-213ENST00000549414 HSPBP1Q9NZL4 362 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 STK38LQ9Y2H1 464 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 RRP15Q9Y3B9 282 aaKnown RBP17.49■□□□□ 0.39
CUX1-213ENST00000549414 NR3C2P08235 984 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 PSMC6P62333 389 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 MAPK6Q16659 721 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 OR6B2Q6IFH4 312 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 SLC30A5Q8TAD4 765 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 ZNF564Q8TBZ8 553 aaPredicted RBP17.49■□□□□ 0.39
CUX1-213ENST00000549414 RNF25Q96BH1 459 aaPredicted RBP17.49■□□□□ 0.39
CUX1-213ENST00000549414 RUNDC3BQ96NL0 473 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 L2HGDHQ9H9P8 463 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 PCDHAC2Q9Y5I4 1007 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 EDRF1Q3B7T1 1238 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 ANGEL2Q5VTE6 544 aaKnown RBP17.49■□□□□ 0.39
CUX1-213ENST00000549414 ALS2CLQ60I27 953 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 RHPN2Q8IUC4 686 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 C2orf69Q8N8R5 385 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 LRRC4BQ9NT99 713 aa17.49■□□□□ 0.39
CUX1-213ENST00000549414 SSU72P8A0A1W2PR75 194 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 CCDC110Q8TBZ0 833 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 FMN2Q9NZ56 1722 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 TLR3O15455 904 aaKnown RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 RPS6P62753 249 aaKnown RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 SLC15A2Q16348 729 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 SLFN12LQ6IEE8 588 aa17.48■□□□□ 0.39
CUX1-213ENST00000549414 JPH1Q9HDC5 661 aaPredicted RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 RBM12Q9NTZ6 932 aaKnown RBP17.48■□□□□ 0.39
CUX1-213ENST00000549414 SLC9A2Q9UBY0 812 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms