RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ARMC9Q7Z3E5 817 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 PRRT2Q7Z6L0 340 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 VSIG10LQ86VR7 867 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 TMTC1Q8IUR5 882 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ZC3H3Q8IXZ2 948 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SMAP1Q8IYB5 467 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SMYD4Q8IYR2 804 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 CPXCR1Q8N123 301 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 GOLGA5Q8TBA6 731 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 LRRC15Q8TF66 581 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 TMEM174Q8WUU8 243 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ZKSCAN4Q969J2 545 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ATG4CQ96DT6 458 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ZNF830Q96NB3 372 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ERGIC2Q96RQ1 377 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 RMDN3Q96TC7 470 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 BAG1Q99933 345 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 PDCD2LQ9BRP1 358 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 OXCT2Q9BYC2 517 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ZSWIM4Q9H7M6 989 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 RAVER2Q9HCJ3 691 aaKnown RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 PXMP2Q9NR77 195 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 KCNH7Q9NS40 1196 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 ZNF214Q9UL59 606 aaPredicted RBP6.84□□□□□ -1.31
SYNE1-239ENST00000545694 KCNH4Q9UQ05 1017 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 DAAM1Q9Y4D1 1078 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 SNCAIPQ9Y6H5 919 aa6.84□□□□□ -1.31
SYNE1-239ENST00000545694 A0A1W2PQJ5 194 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 E9PMD0 336 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 NFIBO00712 420 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 PDXKO00764 312 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 CETN3O15182 167 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 CALUO43852 315 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 STAU1O95793 577 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 MYCP01106 439 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 SSBP05455 408 aaKnown RBP eCLIP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 FCER1AP12319 257 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ITGB5P18084 799 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 EPHX2P34913 555 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 MTIF2P46199 727 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 QARSP47897 775 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ZNF131P52739 623 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 UBXN1Q04323 297 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 LRMPQ12912 555 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 VGLL4Q14135 290 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 GIT2Q14161 759 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ECM1Q16610 540 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 MAN2A1Q16706 1144 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ZCWPW2Q504Y3 356 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ANKRD40Q6AI12 368 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 RINT1Q6NUQ1 792 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 KCNV1Q6PIU1 500 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 C1orf229Q6ZS94 237 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 DYMQ7RTS9 669 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 MIER3Q7Z3K6 550 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 KCNK18Q7Z418 384 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 IRF2BP1Q8IU81 584 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 RIOX2Q8IUF8 465 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 FMNL3Q8IVF7 1028 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 C4orf19Q8IY42 314 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 CCAR2Q8N163 923 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 BANK1Q8NDB2 785 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ZNF397Q8NF99 534 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 CYP2W1Q8TAV3 490 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ZNF507Q8TCN5 953 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 TBC1D5Q92609 795 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 CNOT6LQ96LI5 555 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 INPP4AQ96PE3 977 aaPredicted RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 DUSP9Q99956 384 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 TUBGCP2Q9BSJ2 902 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 CFHR5Q9BXR6 569 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 RUBCNLQ9H714 662 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 C17orf75Q9HAS0 396 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 PARVGQ9HBI0 331 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 METTL14Q9HCE5 456 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 AGO4Q9HCK5 861 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 SLC39A2Q9NP94 309 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ANKEF1Q9NU02 776 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 INTS13Q9NVM9 706 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ZNHIT6Q9NWK9 470 aaKnown RBP6.83□□□□□ -1.32
SYNE1-239ENST00000545694 PYCARDQ9ULZ3 195 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 TRAF3IP3Q9Y228 551 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 SLC45A1Q9Y2W3 748 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 PPME1Q9Y570 386 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 PCDHA2Q9Y5H9 948 aa6.83□□□□□ -1.32
SYNE1-239ENST00000545694 ARHGEF35A5YM69 484 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 SHISA8B8ZZ34 492 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 EML1O00423 815 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 SLC16A3O15427 465 aaKnown RBP6.82□□□□□ -1.32
SYNE1-239ENST00000545694 DHX15O43143 795 aaKnown RBP6.82□□□□□ -1.32
SYNE1-239ENST00000545694 MFAP3LO75121 409 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 EIF3JO75822 258 aaKnown RBP6.82□□□□□ -1.32
SYNE1-239ENST00000545694 FAM13AO94988 1023 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 ARP10275 920 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 TGFB3P10600 412 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 ICAM3P32942 547 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 MAP2K3P46734 347 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 PSMC5P62195 406 aa6.82□□□□□ -1.32
SYNE1-239ENST00000545694 IRX3P78415 501 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms