RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 FAM153BP0C7A2 387 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 FAM153CQ494X1 144 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 PRR16Q569H4 304 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 TCERG1LQ5VWI1 586 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 PPP1R13LQ8WUF5 828 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 FGFBP2Q9BYJ0 223 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 RAB34Q9BZG1 259 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 CUEDC2Q9H467 287 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 VIPAS39Q9H9C1 493 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 RBM12Q9NTZ6 932 aaKnown RBP15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 ADAMTS1Q9UHI8 967 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 FAM153AQ9UHL3 310 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 KIAA1024Q9UPX6 916 aa15.6■□□□□ 0.09
SFSWAP-210ENST00000541286 PARP14Q460N5 1801 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 MEFVO15553 781 aaPredicted RBP15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 SHOX2O60902 331 aaPredicted RBP15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 CEP85LQ5SZL2 805 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 CCDC43Q96MW1 224 aaKnown RBP15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 ZIM3Q96PE6 472 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 ERGIC2Q96RQ1 377 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 HOXC10Q9NYD6 342 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 FNTAP49354 379 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 GTF2A2P52657 109 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 GUCY2DQ02846 1103 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 TAF1CQ15572 869 aaPredicted RBP15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 ECM1Q16610 540 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 LRCH2Q5VUJ6 765 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 UNC13DQ70J99 1090 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 MYOCDQ8IZQ8 938 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 ANKRD35Q8N283 1001 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 FAM133AQ8N9E0 248 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 CAPNS2Q96L46 248 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 BMP2KQ9NSY1 1161 aaPredicted RBP15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 HYOU1Q9Y4L1 999 aa15.59■□□□□ 0.09
SFSWAP-210ENST00000541286 MEIS1O00470 390 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 TRPA1O75762 1119 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 UPP2O95045 317 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 CETPP11597 493 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 CRHR2Q13324 411 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 CENPPQ6IPU0 288 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 DAGLBQ8NCG7 672 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 RPGRIP1Q96KN7 1286 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 NOX5Q96PH1 765 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 SH2D3AQ9BRG2 576 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 TEX13BQ9BXU2 312 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 PANK4Q9NVE7 773 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 HAUS2Q9NVX0 235 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 DDX25Q9UHL0 483 aaKnown RBP15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 NFU1Q9UMS0 254 aa15.58■□□□□ 0.09
SFSWAP-210ENST00000541286 CTGFP29279 349 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 CDR1P51861 262 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 CLNS1AP54105 237 aaKnown RBP15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 HLTFQ14527 1009 aaKnown RBP eCLIP15.58■□□□□ 0.083e-7■■■■■ 26.9
SFSWAP-210ENST00000541286 NAA35Q5VZE5 725 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 RNF207Q6ZRF8 634 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 CCDC13Q8IYE1 715 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 OR2W6PQ8NHA6 318 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 SYTL5Q8TDW5 730 aaPredicted RBP15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 FAM184BQ9ULE4 1060 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 PCDHA12Q9UN75 941 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 CCDC189A1A4V9 331 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 ANO9A1A5B4 782 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 SPDYE3A6NKU9 549 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 HSF2BPO75031 334 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 PALMO75781 387 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 FGFR1OPO95684 399 aaKnown RBP15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 MYCP01106 439 aaPredicted RBP15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 CLK2P49760 499 aaKnown RBP15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 MRPL12P52815 198 aaKnown RBP15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 EPB41L5Q9HCM4 733 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 SIK3Q9Y2K2 1263 aa15.58■□□□□ 0.08
SFSWAP-210ENST00000541286 GCOM1H8Y6P7 765 aaPredicted RBP15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 CHMP2AO43633 222 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 POLR2MP0CAP2 368 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 VEGFBP49765 207 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 NEDD9Q14511 834 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 KIAA0753Q2KHM9 967 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 DEFB115Q30KQ5 88 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 FAM26FQ5R3K3 315 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 GJC2Q5T442 439 aaPredicted RBP15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 RAD54LQ92698 747 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 MIEF2Q96C03 454 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 KRT12Q99456 494 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 PACSIN1Q9BY11 444 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 WDR11Q9BZH6 1224 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 ADAMTS5Q9UNA0 930 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 ZSWIM8A7E2V4 1837 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 SLC10A3P09131 477 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 HOXA7P31268 230 aaPredicted RBP15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 LSP1P33241 339 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 ERVK-9P63128 1117 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 ARHGAP4P98171 946 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 SLC9C1Q4G0N8 1177 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 DCAF17Q5H9S7 520 aaPredicted RBP15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 SFMBT2Q5VUG0 894 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 MAATS1Q7Z4T9 603 aa15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 DDX20Q9UHI6 824 aaKnown RBP15.57■□□□□ 0.08
SFSWAP-210ENST00000541286 POTEB3A0JP26 581 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms