RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 VCAM1P19320 739 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 DPCR1Q3MIW9 517 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 TSC1Q92574 1164 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 CALN1Q9BXU9 219 aa15.3■□□□□ 0.04
COLCA1-204ENST00000540738 FAM217BQ9NTX9 383 aaPredicted RBP15.3■□□□□ 0.04
COLCA1-204ENST00000540738 I3L4J1 428 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 S100BP04271 92 aaPredicted RBP15.29■□□□□ 0.04
COLCA1-204ENST00000540738 ZNF18P17022 549 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 APOEP02649 317 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 HERVK_113P62684 666 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 STARD7Q9NQZ5 370 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 ADM5C9JUS6 153 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 ZNF746Q6NUN9 644 aaPredicted RBP15.29■□□□□ 0.04
COLCA1-204ENST00000540738 HOMER3Q9NSC5 361 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 ANKEF1Q9NU02 776 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 HSPA6P17066 643 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 GCLMP48507 274 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 RBP5P82980 135 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 GJB4Q9NTQ9 266 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 MKRN1Q9UHC7 482 aaKnown RBP15.29■□□□□ 0.04
COLCA1-204ENST00000540738 C3P01024 1663 aa15.29■□□□□ 0.04
COLCA1-204ENST00000540738 ZNF484Q5JVG2 852 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 DENND2CQ68D51 928 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 ARHGEF18Q6ZSZ5 1173 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 GUF1Q8N442 669 aaKnown RBP15.28■□□□□ 0.04
COLCA1-204ENST00000540738 NGRNQ9NPE2 291 aaKnown RBP15.28■□□□□ 0.04
COLCA1-204ENST00000540738 COBLO75128 1261 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 SPATA2LQ8IUW3 424 aaPredicted RBP15.28■□□□□ 0.04
COLCA1-204ENST00000540738 PHF20Q9BVI0 1012 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 TRIM17Q9Y577 477 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 NR2E3Q9Y5X4 410 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 CYP27A1Q02318 531 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 CCDC6Q16204 474 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 STOX1Q6ZVD7 989 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 PARD3BQ8TEW8 1205 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 TAAR1Q96RJ0 339 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 SPATC1LQ9H0A9 340 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 GPR182O15218 404 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 RWDD4Q6NW29 188 aaKnown RBP15.28■□□□□ 0.04
COLCA1-204ENST00000540738 TXNRD3Q86VQ6 643 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 CCDC170Q8IYT3 715 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 IDI2Q9BXS1 227 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 DNAJC12Q9UKB3 198 aa15.28■□□□□ 0.04
COLCA1-204ENST00000540738 ERICH4A6NGS2 130 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 BNIP3LO60238 219 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 VIL1P09327 827 aaKnown RBP15.27■□□□□ 0.04
COLCA1-204ENST00000540738 NOTUMQ6P988 496 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 TMEM270Q6UE05 265 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 KRT222Q8N1A0 295 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 ASNSD1Q9NWL6 643 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 ADAM22Q9P0K1 906 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 LSM7Q9UK45 103 aaKnown RBP15.27■□□□□ 0.04
COLCA1-204ENST00000540738 MAD1L1Q9Y6D9 718 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 RAD51Q06609 339 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 SNX17Q15036 470 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 ZNF394Q53GI3 561 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 EFCAB12Q6NXP0 572 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 RHOT2Q8IXI1 618 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 DCP1BQ8IZD4 617 aaKnown RBP15.27■□□□□ 0.04
COLCA1-204ENST00000540738 CCHCR1Q8TD31 782 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 SEPT8Q92599 483 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 CALR3Q96L12 384 aaKnown RBP15.27■□□□□ 0.04
COLCA1-204ENST00000540738 FBXO28Q9NVF7 368 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 RGL1Q9NZL6 768 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 SGK1O00141 431 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 MOCS3O95396 460 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 CYBBP04839 570 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 PSMA2P25787 234 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 PPIL2Q13356 520 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 STILQ15468 1287 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 FAM117BQ6P1L5 589 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 TMEM143Q96AN5 459 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 MRIQ9BWK5 157 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 ZMYND12Q9H0C1 365 aa15.27■□□□□ 0.04
COLCA1-204ENST00000540738 UBE4BO95155 1302 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 SLC26A2P50443 739 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 OAZ1P54368 228 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 TTC30AQ86WT1 665 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 DNAAF3Q8N9W5 541 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 CCSER1Q9C0I3 900 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 KCNH7Q9NS40 1196 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 LRRD1A4D1F6 860 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 TRPA1O75762 1119 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 IL18RAPO95256 599 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 TCF7P36402 384 aaPredicted RBP15.27■□□□□ 0.03
COLCA1-204ENST00000540738 THPOP40225 353 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 TCP11X2Q5H9J9 407 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 DNERQ8NFT8 737 aa15.27■□□□□ 0.03
COLCA1-204ENST00000540738 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.27■□□□□ 0.03
COLCA1-204ENST00000540738 V9GYY5 206 aaPredicted RBP15.27■□□□□ 0.03
COLCA1-204ENST00000540738 ARHGEF28Q8N1W1 1705 aaKnown RBP15.26■□□□□ 0.03
COLCA1-204ENST00000540738 DDTLA6NHG4 134 aaPredicted RBP15.26■□□□□ 0.03
COLCA1-204ENST00000540738 VPS41P49754 854 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 MAP7Q14244 749 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 BTBD8Q5XKL5 378 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 PPP4R1Q8TF05 950 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 PPP2R2CQ9Y2T4 447 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 KIF20BQ96Q89 1820 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 DSG3P32926 999 aa15.26■□□□□ 0.03
COLCA1-204ENST00000540738 REM2Q8IYK8 340 aaPredicted RBP15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms