RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 GLI1P08151 1106 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 NUDT17P0C025 328 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ATP2A2P16615 1042 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 CCNE1P24864 410 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 CTNNA1P35221 906 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 KRT2P35908 639 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 HSD17B3P37058 310 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 CARSP49589 748 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 PDE6CP51160 858 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 NLRP5P59047 1200 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 GUCY2DQ02846 1103 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ZNF844Q08AG5 666 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 CUL3Q13618 768 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ZRSR2Q15696 482 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 PTPN21Q16825 1174 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 PARP6Q2NL67 630 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 GALNTL6Q49A17 601 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ODF2Q5BJF6 829 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 KCTD16Q68DU8 428 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ZNF530Q6P9A1 599 aaPredicted RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 CAPN12Q6ZSI9 719 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 CHST3Q7LGC8 479 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ATG9AQ7Z3C6 839 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 COL23A1Q86Y22 540 aaPredicted RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 KCNH5Q8NCM2 988 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 GIMAP8Q8ND71 665 aaPredicted RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 SCFD2Q8WU76 684 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 HDAC7Q8WUI4 952 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ATXN2LQ8WWM7 1075 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 PPP1R14BQ96C90 147 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 GRAMD1AQ96CP6 724 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 STAMBPL1Q96FJ0 436 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 NAF1Q96HR8 494 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 INPP4AQ96PE3 977 aaPredicted RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 TUBGCP2Q9BSJ2 902 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 SLC26A6Q9BXS9 759 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 ARHGEF3Q9NR81 526 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 RBM12Q9NTZ6 932 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 CTTNBP2NLQ9P2B4 639 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 USP20Q9Y2K6 914 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 RTCBQ9Y3I0 505 aaKnown RBP7.29□□□□□ -1.24
USP28-207ENST00000538475 ASB3Q9Y575 518 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 PCDHB6Q9Y5E3 794 aa7.29□□□□□ -1.24
USP28-207ENST00000538475 XDHP47989 1333 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 MYH11P35749 1972 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 SPDYE3A6NKU9 549 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 F8W031 263 aaPredicted RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 OPLAHO14841 1288 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 FOXP2O15409 715 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 GPAA1O43292 621 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 AKR1B10O60218 316 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 RANBP6O60518 1105 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 HNRNPCL1O60812 293 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 HIP1RO75146 1068 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 SUN1O94901 812 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 AGTP01019 485 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 PENKP01210 267 aaPredicted RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 IGHA1P01876 353 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 RPSAP08865 295 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 CALM1P0DP23 149 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 CALM2P0DP24 149 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 CALM3P0DP25 149 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 RARAP10276 462 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 PCP11498 1178 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 GNAT2P19087 354 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 COL8A1P27658 744 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 ALDH3A1P30838 453 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 AFMP43652 599 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 MMP13P45452 471 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 KIF11P52732 1056 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 DRG2P55039 364 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 ATP2B2Q01814 1243 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 NAB2Q15742 525 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 TSNAXIP1Q2TAA8 658 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 PLA2G4EQ3MJ16 856 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 TMEM67Q5HYA8 995 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 MEI1Q5TIA1 1274 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 KLHDC7AQ5VTJ3 777 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 TTI2Q6NXR4 508 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 NFXL1Q6ZNB6 911 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 USP38Q8NB14 1042 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 NGDNQ8NEJ9 315 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 PLBD2Q8NHP8 589 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 NUP133Q8WUM0 1156 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 CASKIN2Q8WXE0 1202 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 TAF4BQ92750 862 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 MDFIQ99750 246 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 PLVAPQ9BX97 442 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 RNF41Q9H4P4 317 aaPredicted RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 LGR6Q9HBX8 967 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 C11orf16Q9NQ32 467 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 DNAJB12Q9NXW2 375 aaKnown RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 LRWD1Q9UFC0 647 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 TTC7AQ9ULT0 858 aaPredicted RBP7.28□□□□□ -1.24
USP28-207ENST00000538475 SLC4A7Q9Y6M7 1214 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 TMEM2Q9UHN6 1383 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 LAMB1P07942 1786 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 UBR2Q8IWV8 1755 aa7.28□□□□□ -1.24
USP28-207ENST00000538475 KIF13AQ9H1H9 1805 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms