RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ECHDC2Q86YB7 292 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 ATXN2LQ8WWM7 1075 aaKnown RBP16.5■□□□□ 0.23
USP28-204ENST00000537642 TCP11Q8WWU5 503 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 MTRQ99707 1265 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 POLR3CQ9BUI4 534 aaPredicted RBP16.5■□□□□ 0.23
USP28-204ENST00000537642 COL25A1Q9BXS0 654 aaPredicted RBP16.5■□□□□ 0.23
USP28-204ENST00000537642 INO80BQ9C086 356 aaPredicted RBP16.5■□□□□ 0.23
USP28-204ENST00000537642 ATP6V0A4Q9HBG4 840 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 TUFT1Q9NNX1 390 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 RNF19AQ9NV58 838 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 SMC3Q9UQE7 1217 aa16.5■□□□□ 0.23
USP28-204ENST00000537642 XIRP2A4UGR9 3374 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 TBKBP1A7MCY6 615 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 GRM6O15303 877 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 SRGAP2CP0DJJ0 459 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 XRCC6P12956 609 aaKnown RBP eCLIP16.49■□□□□ 0.23
USP28-204ENST00000537642 SFPQP23246 707 aaKnown RBP eCLIP16.49■□□□□ 0.23
USP28-204ENST00000537642 PTPROQ16827 1216 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 FERMT3Q86UX7 667 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 C11orf84Q9BUA3 381 aaPredicted RBP16.49■□□□□ 0.23
USP28-204ENST00000537642 PLVAPQ9BX97 442 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 MINDY3Q9H8M7 445 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 CHST12Q9NRB3 414 aa16.49■□□□□ 0.23
USP28-204ENST00000537642 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.49■□□□□ 0.23
USP28-204ENST00000537642 A0A0U1RQF3 1178 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 H3BQV1 296 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 ASAP2O43150 1006 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 DGAT1O75907 488 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 ATF7P17544 494 aaPredicted RBP16.48■□□□□ 0.23
USP28-204ENST00000537642 RPA1P27694 616 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 FXR2P51116 673 aaKnown RBP eCLIP16.48■□□□□ 0.23
USP28-204ENST00000537642 PTGDRQ13258 359 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 CUL4AQ13619 759 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 CATSPER4Q7RTX7 472 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 SRGAP1Q7Z6B7 1085 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 ZNF598Q86UK7 904 aaKnown RBP16.48■□□□□ 0.23
USP28-204ENST00000537642 ASB2Q96Q27 587 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.48■□□□□ 0.23
USP28-204ENST00000537642 DACT1Q9NYF0 836 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 HCSTQ9UBK5 93 aa16.48■□□□□ 0.23
USP28-204ENST00000537642 CUL9Q8IWT3 2517 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 ARL2P36404 184 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 MRPS5P82675 430 aaKnown RBP16.47■□□□□ 0.23
USP28-204ENST00000537642 TFF2Q03403 129 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 TJAP1Q5JTD0 557 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 POTEGQ6S5H5 508 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 RNF149Q8NC42 400 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 ERMNQ8TAM6 284 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 ASAP3Q8TDY4 903 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 P2RX5Q93086 422 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 CCDC43Q96MW1 224 aaKnown RBP16.47■□□□□ 0.23
USP28-204ENST00000537642 CASD1Q96PB1 797 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 TMEM117Q9H0C3 514 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 DBR1Q9UK59 544 aaKnown RBP16.47■□□□□ 0.23
USP28-204ENST00000537642 PLAGL2Q9UPG8 496 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 PIN4Q9Y237 131 aaKnown RBP16.47■□□□□ 0.23
USP28-204ENST00000537642 GTF3C3Q9Y5Q9 886 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 PLXNA4Q9HCM2 1894 aa16.47■□□□□ 0.23
USP28-204ENST00000537642 USO1O60763 962 aaKnown RBP16.46■□□□□ 0.23
USP28-204ENST00000537642 EOMESO95936 686 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 ITGB1P05556 798 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 PHKA2P46019 1235 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 PDIA5Q14554 519 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 MXD4Q14582 209 aaPredicted RBP16.46■□□□□ 0.23
USP28-204ENST00000537642 IL17AQ16552 155 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 ECM1Q16610 540 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 TIGD5Q53EQ6 642 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 NAALADL2Q58DX5 795 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 CLLU1OSQ5K130 101 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 LARP1BQ659C4 914 aaKnown RBP16.46■□□□□ 0.23
USP28-204ENST00000537642 TWF2Q6IBS0 349 aaKnown RBP16.46■□□□□ 0.23
USP28-204ENST00000537642 IGSF22Q8N9C0 903 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 KLHL23Q8NBE8 558 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 RNF169Q8NCN4 708 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 NACC1Q96RE7 527 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 TRAIPQ9BWF2 469 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 LMAN2LQ9H0V9 348 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 CWH43Q9H720 699 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 ALG13Q9NP73 1137 aaKnown RBP16.46■□□□□ 0.23
USP28-204ENST00000537642 AGPAT5Q9NUQ2 364 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 TYW1Q9NV66 732 aaKnown RBP16.46■□□□□ 0.23
USP28-204ENST00000537642 LRWD1Q9UFC0 647 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 COG5Q9UP83 839 aa16.46■□□□□ 0.23
USP28-204ENST00000537642 TCF20Q9UGU0 1960 aaKnown RBP16.46■□□□□ 0.22
USP28-204ENST00000537642 LAD1O00515 517 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 HOXA2O43364 376 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 MUTP22033 750 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 GLRA2P23416 452 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 DNAJB1P25685 340 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 HOXA11P31270 313 aaPredicted RBP16.45■□□□□ 0.22
USP28-204ENST00000537642 PTENP60484 403 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 CAPSQ13938 189 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 CAMK1Q14012 370 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 RILPL1Q5EBL4 403 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 TCEAL5Q5H9L2 206 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 SPOUT1Q5T280 376 aaKnown RBP16.45■□□□□ 0.22
USP28-204ENST00000537642 HAUS3Q68CZ6 603 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 LRRC55Q6ZSA7 311 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 SPPL3Q8TCT6 385 aa16.45■□□□□ 0.22
USP28-204ENST00000537642 HLA-CQ95604 372 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms