RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TAF1DQ9H5J8 278 aaPredicted RBP14.29□□□□□ -0.12
LDLR-203ENST00000535915 OSGEPQ9NPF4 335 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 KCNH7Q9NS40 1196 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 STXBP5LQ9Y2K9 1186 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 RRP15Q9Y3B9 282 aaKnown RBP14.29□□□□□ -0.12
LDLR-203ENST00000535915 SAMM50Q9Y512 469 aa14.29□□□□□ -0.12
LDLR-203ENST00000535915 KRIT1O00522 736 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 TBC1D12O60347 775 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 HSD17B4P51659 736 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 MREGQ8N565 214 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 SLC35G2Q8TBE7 412 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 CTNNBL1Q8WYA6 563 aaPredicted RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 PCIF1Q9H4Z3 704 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 ZNF277Q9NRM2 450 aaPredicted RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 AMFRQ9UKV5 643 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 SART1O43290 800 aaKnown RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 PPP1R37O75864 691 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 ICAM1P05362 532 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 ZBTB48P10074 688 aaPredicted RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 KRT13P13646 458 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 TNFAIP3P21580 790 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 INPP5BP32019 993 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 IRAK1P51617 712 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 ERVK-9P63128 1117 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 KCTD16Q68DU8 428 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 SLC9A9Q8IVB4 645 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 FMNL3Q8IVF7 1028 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 PROCA1Q8NCQ7 364 aaPredicted RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 OLIG1Q8TAK6 271 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 STRA6Q9BX79 667 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 DDX47Q9H0S4 455 aaKnown RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 ISCUQ9H1K1 167 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 COL20A1Q9P218 1284 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 LARSQ9P2J5 1176 aaKnown RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 NFIBO00712 420 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 LRRN2O75325 713 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 P4HBP07237 508 aaKnown RBP14.28□□□□□ -0.12
LDLR-203ENST00000535915 ASNSP08243 561 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 TMEM253P0C7T8 217 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 PHLDB3Q6NSJ2 640 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 RFFLQ8WZ73 363 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 HES6Q96HZ4 224 aa14.28□□□□□ -0.12
LDLR-203ENST00000535915 ZNF233A6NK53 670 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 CCDC188H7C350 402 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 MYO1CO00159 1063 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 BUB1BO60566 1050 aaPredicted RBP14.27□□□□□ -0.12
LDLR-203ENST00000535915 CLSTN1O94985 981 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 PTGER2P43116 358 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 IL31RAQ8NI17 732 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 ZNF341Q9BYN7 854 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 BCS1LQ9Y276 419 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 ZHX2Q9Y6X8 837 aa14.27□□□□□ -0.12
LDLR-203ENST00000535915 TNS1Q9HBL0 1735 aaKnown RBP14.27□□□□□ -0.13
LDLR-203ENST00000535915 NCANO14594 1321 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 ZNF536O15090 1300 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 TISP43B9A030 160 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 BCRP11274 1271 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 GNGT1P63211 74 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 DLG4P78352 724 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 CUL1Q13616 776 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 TTC19Q6DKK2 380 aaPredicted RBP14.27□□□□□ -0.13
LDLR-203ENST00000535915 RTKN2Q8IZC4 609 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 CPXCR1Q8N123 301 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 RASGEF1CQ8N431 466 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 SH2D3CQ8N5H7 860 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 PIK3R5Q8WYR1 880 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 SYT11Q9BT88 431 aa14.27□□□□□ -0.13
LDLR-203ENST00000535915 EMSYQ7Z589 1322 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 IGSF9BQ9UPX0 1349 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 COL4A5P29400 1685 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 FOXN3O00409 490 aaPredicted RBP14.26□□□□□ -0.13
LDLR-203ENST00000535915 ITGA4P13612 1032 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 GTF2A1P52655 376 aaPredicted RBP14.26□□□□□ -0.13
LDLR-203ENST00000535915 FKBP1CQ5VVH2 108 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 INTS8Q75QN2 995 aaKnown RBP14.26□□□□□ -0.13
LDLR-203ENST00000535915 DDX42Q86XP3 938 aaKnown RBP eCLIP14.26□□□□□ -0.131e-7■■■□□ 15
LDLR-203ENST00000535915 TTLL6Q8N841 843 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.26□□□□□ -0.13
LDLR-203ENST00000535915 SH2D3AQ9BRG2 576 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 DEFB129Q9H1M3 183 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 TMEM206Q9H813 350 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 AMACRQ9UHK6 382 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 TRIM66O15016 1216 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 ALAS1P13196 640 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 CETN1Q12798 172 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 MYBPC2Q14324 1141 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 TRMT1LQ7Z2T5 733 aaKnown RBP14.26□□□□□ -0.13
LDLR-203ENST00000535915 MAATS1Q7Z4T9 603 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 FAM83AQ86UY5 434 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 UBE2TQ9NPD8 197 aaPredicted RBP14.26□□□□□ -0.13
LDLR-203ENST00000535915 HOMER2Q9NSB8 354 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 TAS2R14Q9NYV8 317 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 PPP1R9AQ9ULJ8 1098 aa14.26□□□□□ -0.13
LDLR-203ENST00000535915 RPTORQ8N122 1335 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 TULP1O00294 542 aaPredicted RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 DHX15O43143 795 aaKnown RBP14.25□□□□□ -0.13
LDLR-203ENST00000535915 RFX1P22670 979 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 RARRES1P49788 294 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 VAMP7P51809 220 aa14.25□□□□□ -0.13
LDLR-203ENST00000535915 ITGB3BPQ13352 177 aaPredicted RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms